mRNA_L-elsbetiae_contig17863.5091.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17863.5091.1
Unique NamemRNA_L-elsbetiae_contig17863.5091.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig17863.5091.1 vs. uniprot
Match: D8LQQ0_ECTSI (GPI ethanolamine phosphate transferase 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQQ0_ECTSI)

HSP 1 Score: 271 bits (693), Expect = 3.710e-80
Identity = 157/254 (61.81%), Postives = 167/254 (65.75%), Query Frame = 1
Query:    4 TLFSHAHTQKKKKKRDLHTVDDGVLSHLSSELAKDDWDVLVAHFLGVDHVGHTFGPASQAMEDKLDQINAALRTVFESADDDTVVFVLGDHGMTEDGNHGGATPEETGAALLVWSRSGERLLGPRFLQARQAGA---------------------------------GRPADGDGGGEVLSPEALEDDFGGGGXXXXXXXXRPAAVVGRKVAQIDLVPTISLLLGTPIPFGSLGGVIPEVFAGPYYSDGTGEAE 666
            T FS ++       RDLHTVDDGVLSHLS+EL K DWDVLVAHFLGVDHVGHTFGPASQAMEDKLDQ+NAALRTVFE  DD+TVVFVLGDHGMTEDGNHGGATPEETGAALLVWSRSGERLLGP F   R +G                                  G P+ G G       E  E+D  G           PAA   R+VAQIDLVPTISLLLGTPIPFGSLGGVIPEVF G Y  DG G  +
Sbjct:  224 TYFSRSYPFPSFNTRDLHTVDDGVLSHLSTELGKRDWDVLVAHFLGVDHVGHTFGPASQAMEDKLDQMNAALRTVFEGVDDETVVFVLGDHGMTEDGNHGGATPEETGAALLVWSRSGERLLGPGFKNRRNSGGTPSSRRXXXXXXXXXXXXXXXXXXXXXXXXRRQGGPSQGHGDVAAGEEEGSEEDHSG---------PVPAA---RRVAQIDLVPTISLLLGTPIPFGSLGGVIPEVFGGAYL-DGGGSGD 464          
BLAST of mRNA_L-elsbetiae_contig17863.5091.1 vs. uniprot
Match: A0A836CFR5_9STRA (GPI ethanolamine phosphate transferase 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFR5_9STRA)

HSP 1 Score: 176 bits (446), Expect = 1.080e-49
Identity = 105/199 (52.76%), Postives = 120/199 (60.30%), Query Frame = 1
Query:   46 RDLHTVDDGVLSHLSSELAKDDWDVLVAHFLGVDHVGHTFGPASQAMEDKLDQINAALRTVFESADDD-TVVFVLGDHGMTEDGNHGGATPEETGAALLVWSRSGERLLGPRFLQARQAGAGRPADGDGGGEVLSPEALEDDFGGGGXXXXXXXXRPAAVVGRKVAQIDLVPTISLLLGTPIPFGSLGGVIPEVFAGPY 639
            RDLHTVDDGVL+ L +ELA  DW VLVAHFLGVDHVGHT GPA++AM DKL Q++AALR V  +AD    +V V+GDHGMTEDGNHGGAT  ET AALL+  R                                        GGG         R AA       Q+DLVPT+SLL+G PIPFGSLGGV+PE+FAGPY
Sbjct:  182 RDLHTVDDGVLARLPAELAARDWRVLVAHFLGVDHVGHTHGPATRAMADKLAQMDAALRAVLAAADAARALVLVMGDHGMTEDGNHGGATAAETDAALLLGGRGA--------------------------------------GGGVRSGGVREARGAAF------QVDLVPTLSLLMGLPIPFGSLGGVLPELFAGPY 336          
BLAST of mRNA_L-elsbetiae_contig17863.5091.1 vs. uniprot
Match: A0A067CQW9_SAPPC (GPI ethanolamine phosphate transferase 3 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CQW9_SAPPC)

HSP 1 Score: 178 bits (451), Expect = 9.030e-48
Identity = 101/199 (50.75%), Postives = 126/199 (63.32%), Query Frame = 1
Query:   46 RDLHTVDDGVLSHLSSELAKDDWDVLVAHFLGVDHVGHTFGPASQAMEDKLDQINAALRTVFESADDDTVVFVLGDHGMTEDGNHGGATPEETGAALLVWSRSGERLLGPRFLQARQAGAGRPADGDGGGEVLSPEALEDDFGGGGXXXXXXXXRPAAVVGRK-----VAQIDLVPTISLLLGTPIPFGSLGGVIPEVF 627
            +DLHTVD+GVL+H+  ELA  DWDVL+AHFLGVDHVGHT+GP S  ME KLDQ++A L T+  + +DDT+V VLGDHGM+EDGNHGGAT +ETGAAL ++S++                            + +P+        GG            VVGR+     VAQ+DLVPT+SLLLG PIPFG+LG VIP VF
Sbjct:  198 KDLHTVDNGVLAHIFDELALPDWDVLIAHFLGVDHVGHTYGPNSPYMETKLDQMDAFLETLLATVEDDTLVVVLGDHGMSEDGNHGGATDDETGAALFLYSKTPLHHA-----------------------IAAPD--------GGTLSLFNH-----VVGRRSNEYTVAQVDLVPTLSLLLGLPIPFGNLGAVIPHVF 360          
BLAST of mRNA_L-elsbetiae_contig17863.5091.1 vs. uniprot
Match: A0A1W0A6G4_9STRA (GPI ethanolamine phosphate transferase 3 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6G4_9STRA)

HSP 1 Score: 166 bits (421), Expect = 1.160e-43
Identity = 91/195 (46.67%), Postives = 119/195 (61.03%), Query Frame = 1
Query:   46 RDLHTVDDGVLSHLSSELAKDDWDVLVAHFLGVDHVGHTFGPASQAMEDKLDQINAALRTVFESADDDTVVFVLGDHGMTEDGNHGGATPEETGAALLVWSRSG-ERLLGPRFLQARQAGAGRPADGDGGGEVLSPEALEDDFGGGGXXXXXXXXRPAAVVGRKVAQIDLVPTISLLLGTPIPFGSLGGVIPEVF 627
            +DLHTVD+GVL+H+  EL + DWDVL+AHFLGVDHVGHT+GP S  ME KLDQ+N  L+++ E  D  +++ VLGDHGM++DGNHGGAT +ETGAAL ++S++     LG                       +      ++F                     VAQ+DLVPT+SLLLG PIPFG+LG VIP +F
Sbjct:  197 KDLHTVDNGVLAHIYPELEQSDWDVLIAHFLGVDHVGHTYGPNSPFMESKLDQMNDFLKSIIERVDTGSLLVVLGDHGMSDDGNHGGATDDETGAALFLYSKTMLHHTLGTEKSTVSYF------------NHIIGHTKSNEF--------------------SVAQVDLVPTLSLLLGLPIPFGNLGAVIPHLF 359          
BLAST of mRNA_L-elsbetiae_contig17863.5091.1 vs. uniprot
Match: A0A1V9ZUS7_9STRA (GPI ethanolamine phosphate transferase 3 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZUS7_9STRA)

HSP 1 Score: 166 bits (421), Expect = 1.230e-43
Identity = 98/199 (49.25%), Postives = 123/199 (61.81%), Query Frame = 1
Query:   46 RDLHTVDDGVLSHLSSELAKDDWDVLVAHFLGVDHVGHTFGPASQAMEDKLDQINAALRTVFESADDDTVVFVLGDHGMTEDGNHGGATPEETGAALLVWSRSGERLLGPRFLQARQAGAGRPADGDGGGEVLSPEALEDDFGGGGXXXXXXXXRPAAVVGRK-----VAQIDLVPTISLLLGTPIPFGSLGGVIPEVF 627
            +DLHTVD+GVL H+  EL + DWDVL+AHFLGVDHVGHT GP S  M  KLDQ++A L  +F +  DDT+V VLGDHGM+EDGNHGGAT +ETGAAL ++S++           A  A  G             P +L +                  V+GR+     VAQ+DLVPT++LLLG PIPFG+LG VIP +F
Sbjct:  198 KDLHTVDNGVLDHIFLELQQPDWDVLIAHFLGVDHVGHTHGPNSPFMGAKLDQMDAFLERLFTAVADDTLVVVLGDHGMSEDGNHGGATDDETGAALFLYSKA-------PLHHAIAAPGG-------------PMSLYNH-----------------VLGRRANDLTVAQVDLVPTLALLLGLPIPFGNLGAVIPHLF 359          
BLAST of mRNA_L-elsbetiae_contig17863.5091.1 vs. uniprot
Match: L8GJJ5_ACACA (GPI ethanolamine phosphate transferase 3 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GJJ5_ACACA)

HSP 1 Score: 165 bits (418), Expect = 4.260e-43
Identity = 102/226 (45.13%), Postives = 130/226 (57.52%), Query Frame = 1
Query:    1 KTLFSHAHTQKKKKKRDLHTVDDGVLSHLSSEL-------AKDDWDVLVAHFLGVDHVGHTFGPASQAMEDKLDQINAALRTVFESADDDTVVFVLGDHGMTEDGNHGGATPEETGAALLVWSRSGERLLGPRFLQARQAGAGRPADGDGGGEVLSPE---ALEDDFGGGGXXXXXXXXRPAAVV-----GRKVAQIDLVPTISLLLGTPIPFGSLGGVIPEVFAG 633
            K  F+ +H       +DLHTVDDGV+ HL  E+        ++ W+V+VAHFLGVDH GH FGP+   M  KL Q+N  L+ + E+ +DDT++FV+GDHGMT DGNHGG T  E  AAL V++ S        F +  Q   G        G  L  E   AL  +   G         RP  VV      R+V+QID+VPTI+LLLG PIPFG+LGGVIPE+F G
Sbjct:  151 KRYFTRSHPFPSFNVKDLHTVDDGVMRHLFPEMRNEPAAEGEEGWEVIVAHFLGVDHAGHRFGPSHPQMRQKLRQMNGILQQIVEAMEDDTILFVMGDHGMTADGNHGGHTESEVTAALFVYTPS------TTFNRWDQLHLGEDIKDVFTGSELGEELKDALLRERATGAPAAAKQPARPEGVVLTKDHFRQVSQIDVVPTIALLLGLPIPFGNLGGVIPELFLG 370          
BLAST of mRNA_L-elsbetiae_contig17863.5091.1 vs. uniprot
Match: A0A8J5JAW6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JAW6_9STRA)

HSP 1 Score: 157 bits (396), Expect = 6.540e-42
Identity = 95/214 (44.39%), Postives = 125/214 (58.41%), Query Frame = 1
Query:   46 RDLHTVDDGVLSHLSSELAKDDWDVLVAHFLGVDHVGHTFGPASQAMEDKLDQINAALRTVFESADD-----DTVVFVLGDHGMTEDGNHGGATPEETGAALLVWSRSGERLLGPRFLQARQAGAGRPADGDGGGEVLSPEALEDDFGGGGXXXXXXXXRPAAVV---GRKVAQIDLVPTISLLLGTPIPFGSLGGVIPEVFAGPYYSDGTGEA 663
            +DLH+VD GV +HL  EL K DWD+L+AHFLGVDHVGHT GP+S  M +KLD++N  L+ + ++  D     D ++ VLGDHGM+ DGNHGGA+ EETGAAL ++S++     G                    GE  S EA E               R A  +    ++V Q+DLVPT++LL G PIPFG+LG VIP +F  P  S   GE+
Sbjct:  206 KDLHSVDRGVTAHLFPELQKPDWDLLIAHFLGVDHVGHTHGPSSVFMAEKLDEMNGILKKLLQTLKDMPDGDDVLLAVLGDHGMSADGNHGGASDEETGAALFLYSKAALVATG--------------------GENDSEEAKE-------------LKRYAERILDSSQEVPQVDLVPTLALLSGLPIPFGNLGSVIPSLFFVPPSSSKRGES 386          
BLAST of mRNA_L-elsbetiae_contig17863.5091.1 vs. uniprot
Match: UPI0014556456 (GPI ethanolamine phosphate transferase 3-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014556456)

HSP 1 Score: 162 bits (409), Expect = 6.710e-42
Identity = 93/197 (47.21%), Postives = 114/197 (57.87%), Query Frame = 1
Query:   46 RDLHTVDDGVLSHLSSELAKDDWDVLVAHFLGVDHVGHTFGPASQAMEDKLDQINAALRTVFESADDDTVVFVLGDHGMTEDGNHGGATPEETGAALLVWSRSGERLLGPRFLQARQAGAGRPADGDGGGEVLSPEALEDDFGGGGXXXXXXXXRPAAVVGRKVAQIDLVPTISLLLGTPIPFGSLGGVIPEVFAGP 636
            +DLHTVD+GVL HL  E+A+ DWDV++AHFLGVDH GH FGP   AM +KL Q++  LR+V E   DDTV+FV GDHGMT  G+HGG + +E  AAL V+S        P  L                 E  + EAL                         V+QIDLVPT+SLLLGTPIPF +LG VIPE+F+ P
Sbjct:  192 KDLHTVDNGVLEHLIPEMAEKDWDVIIAHFLGVDHCGHRFGPYHSAMGEKLSQMDQVLRSVVEKLSDDTVLFVFGDHGMTRTGDHGGDSADEVAAALFVYS--------PSILHQ---------------ESPNKEAL-----------------------CSVSQIDLVPTLSLLLGTPIPFSNLGSVIPELFSLP 342          
BLAST of mRNA_L-elsbetiae_contig17863.5091.1 vs. uniprot
Match: A0A485KED0_9STRA (GPI ethanolamine phosphate transferase 3 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KED0_9STRA)

HSP 1 Score: 161 bits (408), Expect = 7.190e-42
Identity = 95/195 (48.72%), Postives = 116/195 (59.49%), Query Frame = 1
Query:   46 RDLHTVDDGVLSHLSSEL-AKDDWDVLVAHFLGVDHVGHTFGPASQAMEDKLDQINAALRTVFESADDDTVVFVLGDHGMTEDGNHGGATPEETGAALLVWSRSGERLLGPRFLQARQAGAGRPADGDGGGEVLSPEALEDDFGGGGXXXXXXXXRPAAVVGRKVAQIDLVPTISLLLGTPIPFGSLGGVIPEVF 627
            +DLHTVD+GVL H   EL  +DDWDVL+AHFLGVDHVGHTFGP   AME KL Q+NA LR +     DDT+  VLGDHGM+ DGNHGGAT +ETGAAL ++S+S                             L   A+ D                +AVV    AQ+DL+P++SLL+G PIPFG+LG VIP +F
Sbjct:  205 KDLHTVDNGVLDHFFPELETRDDWDVLIAHFLGVDHVGHTFGPNHPAMESKLAQMNAFLRDLTAKLPDDTLAVVLGDHGMSTDGNHGGATDDETGAALFLYSKS-----------------------------LPLHAI-DPATNASMYTTLVDASDSAVV----AQVDLLPSLSLLMGLPIPFGNLGAVIPHLF 365          
BLAST of mRNA_L-elsbetiae_contig17863.5091.1 vs. uniprot
Match: A0A6G0XJI8_9STRA (GPI ethanolamine phosphate transferase 3 n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJI8_9STRA)

HSP 1 Score: 160 bits (404), Expect = 2.200e-41
Identity = 88/194 (45.36%), Postives = 113/194 (58.25%), Query Frame = 1
Query:   46 RDLHTVDDGVLSHLSSELAKDDWDVLVAHFLGVDHVGHTFGPASQAMEDKLDQINAALRTVFESADDDTVVFVLGDHGMTEDGNHGGATPEETGAALLVWSRSGERLLGPRFLQARQAGAGRPADGDGGGEVLSPEALEDDFGGGGXXXXXXXXRPAAVVGRKVAQIDLVPTISLLLGTPIPFGSLGGVIPEVF 627
            +DLHTVD+GVL H   EL  +DWDVL+AHFLGVDH+GHTFGP    ME KL Q++A L  + E    DT+  VLGDHGM+ DGNHGGA+PEETGAAL ++SR+          ++      + AD                                     +VAQ+DLVP++SLL+G PIPFG+LG +IP +F
Sbjct:  204 KDLHTVDNGVLKHFFPELHANDWDVLIAHFLGVDHIGHTFGPNHPTMESKLHQMDAFLAEMTEQLPPDTLAVVLGDHGMSSDGNHGGASPEETGAALFLYSRNEPLHAINNKNESIYTTLFQSAD-------------------------------------EVAQVDLVPSLSLLMGLPIPFGNLGAIIPHLF 360          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17863.5091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQQ0_ECTSI3.710e-8061.81GPI ethanolamine phosphate transferase 3 n=2 Tax=E... [more]
A0A836CFR5_9STRA1.080e-4952.76GPI ethanolamine phosphate transferase 3 n=1 Tax=T... [more]
A0A067CQW9_SAPPC9.030e-4850.75GPI ethanolamine phosphate transferase 3 n=2 Tax=S... [more]
A0A1W0A6G4_9STRA1.160e-4346.67GPI ethanolamine phosphate transferase 3 n=1 Tax=T... [more]
A0A1V9ZUS7_9STRA1.230e-4349.25GPI ethanolamine phosphate transferase 3 n=1 Tax=A... [more]
L8GJJ5_ACACA4.260e-4345.13GPI ethanolamine phosphate transferase 3 n=1 Tax=A... [more]
A0A8J5JAW6_9STRA6.540e-4244.39Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
UPI00145564566.710e-4247.21GPI ethanolamine phosphate transferase 3-like n=1 ... [more]
A0A485KED0_9STRA7.190e-4248.72GPI ethanolamine phosphate transferase 3 n=1 Tax=A... [more]
A0A6G0XJI8_9STRA2.200e-4145.36GPI ethanolamine phosphate transferase 3 n=2 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17863contigL-elsbetiae_contig17863:1186..2544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score273.1
Seed ortholog evalue1.2e-70
Seed eggNOG ortholog2880.D8LQQ0
Preferred namePIGO
KEGG rclassRC00017
KEGG koko:K05288
KEGG ReactionR05923,R08107
KEGG Pathwayko00563,ko01100,map00563,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016740,GO:0016772,GO:0016780,GO:0019538,GO:0019637,GO:0031224,GO:0031984,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0051377,GO:0071704,GO:0090407,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903509
EggNOG free text desc.mannose-ethanolamine phosphotransferase activity
EggNOG OGsCOG1524@1,KOG2126@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons3
Model size717
Cds size717
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17863.5091.1prot_L-elsbetiae_contig17863.5091.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17863 1186..2544 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.2408867-CDS-L-elsbetiae_contig17863:1185..14421622815744.2408867-CDS-L-elsbetiae_contig17863:1185..1442Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17863 1186..1442 -
1691683074.431247-CDS-L-elsbetiae_contig17863:1185..14421691683074.431247-CDS-L-elsbetiae_contig17863:1185..1442Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17863 1186..1442 -
1622815744.2526968-CDS-L-elsbetiae_contig17863:1538..17771622815744.2526968-CDS-L-elsbetiae_contig17863:1538..1777Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17863 1539..1777 -
1691683074.442517-CDS-L-elsbetiae_contig17863:1538..17771691683074.442517-CDS-L-elsbetiae_contig17863:1538..1777Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17863 1539..1777 -
1622815744.262815-CDS-L-elsbetiae_contig17863:2323..25441622815744.262815-CDS-L-elsbetiae_contig17863:2323..2544Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17863 2324..2544 -
1691683074.4510038-CDS-L-elsbetiae_contig17863:2323..25441691683074.4510038-CDS-L-elsbetiae_contig17863:2323..2544Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17863 2324..2544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17863.5091.1

>prot_L-elsbetiae_contig17863.5091.1 ID=prot_L-elsbetiae_contig17863.5091.1|Name=mRNA_L-elsbetiae_contig17863.5091.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=239bp
KTLFSHAHTQKKKKKRDLHTVDDGVLSHLSSELAKDDWDVLVAHFLGVDH
VGHTFGPASQAMEDKLDQINAALRTVFESADDDTVVFVLGDHGMTEDGNH
GGATPEETGAALLVWSRSGERLLGPRFLQARQAGAGRPADGDGGGEVLSP
EALEDDFGGGGDGGGGDGGRPAAVVGRKVAQIDLVPTISLLLGTPIPFGS
LGGVIPEVFAGPYYSDGTGEAEGRMDGGGGGGGGGDDDD
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mRNA from alignment at L-elsbetiae_contig17863:1186..2544-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17863.5091.1 ID=mRNA_L-elsbetiae_contig17863.5091.1|Name=mRNA_L-elsbetiae_contig17863.5091.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1359bp|location=Sequence derived from alignment at L-elsbetiae_contig17863:1186..2544- (Laminarionema elsbetiae ELsaHSoW15)
AAAACGCTCTTTTCTCACGCACACACACAAAAAAAAAAAAAAAAAAGGGA CCTGCACACCGTTGACGACGGCGTCCTGTCCCACCTCTCGAGCGAGCTGG CCAAGGATGACTGGGACGTCCTCGTCGCCCACTTTCTCGGGGTGGACCAC GTCGGCCACACTTTCGGCCCGGCCTCCCAGGCGATGGAAGACAAGCTCGA CCAGATCAACGCCGCCCTGCGGTGCGTTTTTTTTTTTTTTTTTTTTTTTT TTGTAAATTTTTCGTCCCTACCTATACTTTTATTATGTTTGTAAGTCCAT TCACCGTGCGTCTCACCCCCTTAAACGTGTCTANNNNNNNNNNCGCCGGG GCGGCCGCCGGGGCGCGCGCGGGGGGGGCCTCCGCCCCCCCCGTTTCCGG GGCGGCCCCCGGTTGTTTTTTTTTTTTTTTTTTTTTTTCCTGGAAAAGGG TCCGCCCCTACCTACCATATTATTATGTGTGTAGATCTAGGCACGGGCAG TCTCGCACATACAAACGTGTAGATTGACTGCCATATTCCCGTGTGCGTGT CCATAGGGTGGGCCCCTTTATCTCTCCTCCAGTCGAAACCCACCCCGTGT GTATGTCTGCCGTGTATCTGTCTGCCGTGTGTCTGTCTGCCGTCTGCCTG CCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCC TGCCTGCCTGCCTGCCTGCCTGCCTAACCTGCCTGCCTGTCCACTCCCCT GGCTCTGGTCTCGACAGGACGGTATTCGAGAGCGCGGACGACGATACCGT CGTGTTCGTGCTGGGAGACCACGGCATGACCGAGGACGGGAACCACGGCG GTGCGACCCCGGAGGAGACCGGCGCCGCGCTGCTGGTGTGGAGCCGCTCC GGGGAGCGGCTCCTGGGCCCCCGCTTCCTCCAAGCCAGGCAAGCGGGGGC GGGGAGGCCCGCTGACGGGGACGGCGGCGGTGAAGTGCTGTCCCCCGAGG CCCTCGGTGATCGCGGGGAATGGGGCTCGACAGACAGGGAGGGAGAGGGT TCTCGGGGGGGGAAGCACGGCGCGGGGGCGAGAGCGGCGGCGGCGGGGAA AGAGGATGATTTTGGCGGTGGTGGTGACGGCGGTGGTGGTGACGGCGGTC GGCCTGCGGCAGTCGTCGGCCGAAAAGTGGCCCAGATTGATCTCGTGCCG ACGATATCTCTGCTGTTGGGAACGCCGATTCCTTTCGGGAGCCTGGGAGG CGTTATCCCCGAGGTTTTCGCCGGCCCGTACTACTCGGACGGTACTGGGG AGGCCGAAGGGAGGATGGACGGCGGCGGCGGCGGCGGCGGCGGTGGCGAC GACGACGAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17863:1186..2544-

>mRNA_L-elsbetiae_contig17863.5091.1 ID=mRNA_L-elsbetiae_contig17863.5091.1|Name=mRNA_L-elsbetiae_contig17863.5091.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1434bp|location=Sequence derived from alignment at L-elsbetiae_contig17863:1186..2544- (Laminarionema elsbetiae ELsaHSoW15)
AAAACGCTCTTTTCTCACGCACACACACAAAAAAAAAAAAAAAAAAGGGA
CCTGCACACCGTTGACGACGGCGTCCTGTCCCACCTCTCGAGCGAGCTGG
CCAAGGATGACTGGGACGTCCTCGTCGCCCACTTTCTCGGGGTGGACCAC
GTCGGCCACACTTTCGGCCCGGCCTCCCAGGCGATGGAAGACAAGCTCGA
CCAGATCAACGCCGCCCTGCGAAAACGCTCTTTTCTCACGCACACACACA
AAAAAAAAAAAAAAAAAGGGACCTGCACACCGTTGACGACGGCGTCCTGT
CCCACCTCTCGAGCGAGCTGGCCAAGGATGACTGGGACGTCCTCGTCGCC
CACTTTCTCGGGGTGGACCACGTCGGCCACACTTTCGGCCCGGCCTCCCA
GGCGATGGAAGACAAGCTCGACCAGATCAACGCCGCCCTGCGGACGGTAT
TCGAGAGCGCGGACGACGATACCGTCGTGTTCGTGCTGGGAGACCACGGC
ATGACCGAGGACGGGAACCACGGCGGTGCGACCCCGGAGGAGACCGGCGC
CGCGCTGCTGGTGTGGAGCCGCTCCGGGGAGCGGCTCCTGGGCCCCCGCT
TCCTCCAAGCCAGGCAAGCGGGGGCGGGGAGGCCCGCTGACGGGGACGGC
GGCGGTGAAGTGCTGTCCCCCGAGGCCCTCGGACGGTATTCGAGAGCGCG
GACGACGATACCGTCGTGTTCGTGCTGGGAGACCACGGCATGACCGAGGA
CGGGAACCACGGCGGTGCGACCCCGGAGGAGACCGGCGCCGCGCTGCTGG
TGTGGAGCCGCTCCGGGGAGCGGCTCCTGGGCCCCCGCTTCCTCCAAGCC
AGGCAAGCGGGGGCGGGGAGGCCCGCTGACGGGGACGGCGGCGGTGAAGT
GCTGTCCCCCGAGGCCCTCGAGGATGATTTTGGCGGTGGTGGTGACGGCG
GTGGTGGTGACGGCGGTCGGCCTGCGGCAGTCGTCGGCCGAAAAGTGGCC
CAGATTGATCTCGTGCCGACGATATCTCTGCTGTTGGGAACGCCGATTCC
TTTCGGGAGCCTGGGAGGCGTTATCCCCGAGGTTTTCGCCGGCCCGTACT
ACTCGGACGGTACTGGGGAGGCCGAAGGGAGGATGGACGGCGGCGGCGGC
GGCGGCGGCGGTGGCGACGACGACGATAGGATGATTTTGGCGGTGGTGGT
GACGGCGGTGGTGGTGACGGCGGTCGGCCTGCGGCAGTCGTCGGCCGAAA
AGTGGCCCAGATTGATCTCGTGCCGACGATATCTCTGCTGTTGGGAACGC
CGATTCCTTTCGGGAGCCTGGGAGGCGTTATCCCCGAGGTTTTCGCCGGC
CCGTACTACTCGGACGGTACTGGGGAGGCCGAAGGGAGGATGGACGGCGG
CGGCGGCGGCGGCGGCGGTGGCGACGACGACGAT
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