prot_L-elsbetiae_contig995.18879.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig995.18879.1
Unique Nameprot_L-elsbetiae_contig995.18879.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length779
Homology
BLAST of mRNA_L-elsbetiae_contig995.18879.1 vs. uniprot
Match: A0A6H5JHT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT2_9PHAE)

HSP 1 Score: 421 bits (1082), Expect = 6.960e-127
Identity = 400/858 (46.62%), Postives = 466/858 (54.31%), Query Frame = 0
Query:    1 PTAVAIDGNPPLRASAWSASEPTPPPALAPSLDADVDASDVALVDLGSRSLITKDLEKALRLWTRPAILIAGRNSLDRLPTNVPGTILYLDLSFNR---------------------------LTLLDEFAALPLLRELDVSHNNVQNTLGLISNTELRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRTKVDIRALSLNAALRRLRIEGNPFCATGVQHGTYQIAMQHLLPGMVLLDGKPPSTLSASLSSTLPLPXXXXXXXXXATS-HHPNNTRWGSHR--RGASSCSLALRRENGSTREGLMASCPLDFAGDLSVERRWRDSAIAGG----RASPDKRRRHPSARPEGFFSHAAAADSPVDGRDGNLGSCIRVTTGGGGPTVAPGSYVDMFEAALRKDRSAAFATKTADTPDA---AGASNKAIPAPTFPGRL-----KEATQQQPGHSTAL---------------------------------------ATA----------APRAAARRLAWSQARQEGDQXXXXXXXXXXXNDPRKGNANSPG-GGQNPKKSRRTVGAKSLEPT-RTTRGRSSA--------AFAPDRRSRRSFSGDPASALDDRGSG---GXXXXXXXRLGRXXXXSSRQRAGDSGSAGARGGSRGSRREGGSAGVGPGATRHPTKERNNYRRRQTHLEAAAAPSVAAGARSGPLNGSAVGVSATARGRAGMKSGGGGDRKQRSCSSRSGXGVGVGSAQEGA-----SSYRFKTTLGQRSQQ---RPMAPLASPWTPREDAKPWERVGGRRS--GH-----EQEYFDNDGLASSNSEPASSLGG-GGKG-FVSPLSPAGILHRISSNR 737
            P+AVA+D +P  R+ A    E + P A  P        SDV LVDLGSR L+ +DLEKALRLWTRP+ILIAGRNSLDRLP NVPGTILYLDLS+NR                           L  L+ FAALP LRELDVSHN+VQ+ LGL SN  LR       XXXXXXXXXXXXXXXXXXXXXXXL+TK D+RALSLNAALRRLRIEGNP+C+TGVQHGTYQIA+QHLLPGM LLDGKPP  LS SLSST+PL XXXXXXXX   + HH +N+R   HR  RG  S     RR +GS REG MA+  LDF GDLSVERRWRDSA+AG     + +PD  +R  +A   G    A A              CI+VTTGGGGPTVAPGSY ++F AA+RK  S + A    D P A   AG SN +  APT  G +     +   QQQPGH  A                                        ATA          A R AARR AWSQAR+EG                R     +PG GG    +++R VG +SLEPT R+ R R+S         A A  R  R++       A D  GS    G       +LGR      R     +  + ARGG    RR GG     PGATR P    +N R RQT       PS A+G           G + T RGR G +SG G ++  RS  S+     G G  +        SSYRF+TTLG+R  Q   RP AP+ASPWTPREDA+PW   GG+    GH     + E  D D +A  +       G  GGKG FVSPLS AGILHRISS+R
Sbjct:  110 PSAVAMDDDPAPRSPARPGPEESLPTAANP--------SDVLLVDLGSRLLLQEDLEKALRLWTRPSILIAGRNSLDRLPANVPGTILYLDLSWNRRVRSRYILLGATQHFPCPPLCSHPNQRLASLEGFAALPNLRELDVSHNSVQDMLGLGSNVNLRVLRISYNXXXXXXXXXXXXXXXXXXXXXXXLKTKEDVRALSLNAALRRLRIEGNPYCSTGVQHGTYQIALQHLLPGMRLLDGKPPQVLSLSLSSTMPLXXXXXXXXXGKPADHHRHNSRRMPHRTSRGPPSSCSPDRRGSGSIREGFMAASSLDFVGDLSVERRWRDSAVAGKSLYPQFAPDSHQR--AAASGGVRGGARARXXXXXXXXXGREPCIKVTTGGGGPTVAPGSYAEIFVAAMRKQGSTSRAV--VDDPAAFTTAGVSNSSTLAPTQKGVVGTVATERQQQQQPGHRAAAQASHGETSVAAAYRPGKRRIPAGGAEVXXXXXXXXXXXAATASLLSYRGLSRAERGAARREAWSQARREGAVGDGKMQGQRASRWQRN---IAPGVGGGGVARNKRAVGVRSLEPTTRSARRRTSVSGSQMCRVAAASSRHPRQASGTGGDQAFDTDGSAEGVGGGTSSSSKLGRGGAVGPRISVRSNSGSNARGG----RRSGGDLWAKPGATRKPVSI-SNSRSRQT-------PSTASG-----------GEAVTTRGRGGTRSGDG-EKTARSALSKDSRAGGSGGGRPNGNDRSPSSYRFRTTLGRRGSQQPPRPPAPVASPWTPREDARPWGWDGGKEGDRGHGEDDEDDEIRDVDAIADDDHVLGYGDGSSGGKGTFVSPLSTAGILHRISSSR 928          
BLAST of mRNA_L-elsbetiae_contig995.18879.1 vs. uniprot
Match: D8LKE3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKE3_ECTSI)

HSP 1 Score: 409 bits (1050), Expect = 2.830e-126
Identity = 383/771 (49.68%), Postives = 444/771 (57.59%), Query Frame = 0
Query:    1 PTAVAIDGNPPLRASAWSASEPTPPPALAPSLDADVDASDVALVDLGSRSLITKDLEKALRLWTRPAILIAGRNSLDRLPTNVPGTILYLDLSFNRLTLLDEFAALPLLRELDVSHNNVQNTLGLISNTELRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRTKVDIRALSLNAALRRLRIEGNPFCATGVQHGTYQIAMQHLLPGMVLLDGKPPSTLSASLSSTLPLPXXXXXXXXXATS-HHPNNTRWGSHR--RGASSCSLALRRENGSTREGLMASCPLDFAGDLSVERRWRDSAIAG-GRASPDKRRRHPSARPEGFFSHAAAADSPVDGRDGN-LGSCIRVTTGGGGPTVAPGSYVDMFEAALRKDRSAAFATKTADTPDAAGASNKAIPAPTFPGRLKEATQQQPGHSTALATAAP------RAAARRLAWSQARQEGDQXXXXXXXXXXXNDPRKGNANSPG-GGQNPKKSRRTVGAKSLEPT-RTTRGRSSAAFAPDRRSRRSFSGDPASALDDRGSGGXXXXXXX---RLGRXXXXSSRQRAGDSGSAGARGGSRGSRREGGSAGVGPGATRHPTKERNNYRRRQTHLEAAAAPSVAAGARSGPLNGSAVGVSATARGRAGMKSGGGGDRKQRSCSSRSGXGVGVGSAQEGA-----SSYRFKTTLGQRSQQ---RPMAPLASPWTPREDAKPWERVGGR---RSGHEQEYFDN----DGLASSNSEPASSLGG-GGKG-FVSPLSPAGILHRISSNRR 738
            P+AVA+D +P  R+ A    E + P A  P        SDV LVDLGSRSL+ +DLEKALRLWTRP+ILIAGRNSLDRLP NVPGTILYLDLS+NRL  L+ FAALP LRELDVS                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX L+TKVD+RALSLNAALRRLRIEGNP+C+TGVQHGTYQIA+QHLLPGM LLDGK P  LS SLSST+PLPXXXXXXXX     HH +N+R   HR  RG  S     RR +GS REG MAS  LDF GDLSVERRWRDSA+AG  + +PD    H  A   G            DG  G     CI+VTTGGGGPTVAPGSY ++F A +RK+ S    T      D A A+                                      R AARR AWSQAR+EG             +  RK    +PG GG +  ++RR +G +SLEPT R+ R R+ A     R  R++       A D  GS G   XXXX   +LGR    + R     +  + AR G    RR GG +   PGATR P    +N R RQT       PS A+            G + T RGR G +SGGGG +  RS  S+     G G  +        SSYRF+TTLG+R  Q   RP AP+ASPWTPREDA+PW   GG+   R G E    D     D +A  +       GG GG+G FVSPLS AGILHRISS+RR
Sbjct:   84 PSAVAMDDDPAPRSPARPGPEESLPTAANP--------SDVLLVDLGSRSLLQEDLEKALRLWTRPSILIAGRNSLDRLPANVPGTILYLDLSWNRLASLEGFAALPNLRELDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLKTKVDVRALSLNAALRRLRIEGNPYCSTGVQHGTYQIALQHLLPGMSLLDGKAPPVLSLSLSSTMPLPXXXXXXXXGKPGDHHRHNSRRMPHRTSRGTPSSCSPDRRGSGSIREGFMASSSLDFVGDLSVERRWRDSAVAGRSQFTPDS---HQRAVARGGVRGGVRVRGGGDGNGGRGREPCIKVTTGGGGPTVAPGSYAEIFVAGMRKEGS----TSRVGIDDPAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRGAARREAWSQARREGAVGDGKMQEQRTSHRQRKV---APGVGGGDIARNRRALGVRSLEPTTRSARRRTPAXXXXXRHPRQASGAGGDQAFDTDGSAGGVGXXXXSSSKLGRGGAVNPRISVRSNSGSNARVG----RRVGGDSWAKPGATRKPASI-SNSRSRQT-------PSTAS-----------RGETVTVRGRGGTRSGGGG-KTARSALSKDSRAEGSGGGKPNGNARSPSSYRFRTTLGRRGSQQPPRPTAPVASPWTPREDARPWGWGGGKGSDRGGDEDXXXDEIRVVDAIAHDDRVLGYGDGGSGGEGTFVSPLSTAGILHRISSSRR 812          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig995.18879.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHT2_9PHAE6.960e-12746.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKE3_ECTSI2.830e-12649.68Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 44..120
e-value: 6.9E-6
score: 27.5
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 121..219
e-value: 1.0E-14
score: 56.1
NoneNo IPR availablePANTHERPTHR15454NISCHARIN RELATEDcoord: 87..574
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 83..216
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 130..151
score: 8.189
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 108..129
score: 6.149
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 152..173
score: 5.925
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 86..107
score: 6.749

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig995contigL-elsbetiae_contig995:16547..20490 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig995.18879.1mRNA_L-elsbetiae_contig995.18879.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig995 16547..20490 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig995.18879.1 ID=prot_L-elsbetiae_contig995.18879.1|Name=mRNA_L-elsbetiae_contig995.18879.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=779bp
PTAVAIDGNPPLRASAWSASEPTPPPALAPSLDADVDASDVALVDLGSRS
LITKDLEKALRLWTRPAILIAGRNSLDRLPTNVPGTILYLDLSFNRLTLL
DEFAALPLLRELDVSHNNVQNTLGLISNTELRVLRISHNCIRRIEGFHPL
KRLEEVDLSHNILRTKVDIRALSLNAALRRLRIEGNPFCATGVQHGTYQI
AMQHLLPGMVLLDGKPPSTLSASLSSTLPLPPPPRPPPPGATSHHPNNTR
WGSHRRGASSCSLALRRENGSTREGLMASCPLDFAGDLSVERRWRDSAIA
GGRASPDKRRRHPSARPEGFFSHAAAADSPVDGRDGNLGSCIRVTTGGGG
PTVAPGSYVDMFEAALRKDRSAAFATKTADTPDAAGASNKAIPAPTFPGR
LKEATQQQPGHSTALATAAPRAAARRLAWSQARQEGDQQQQQQQQQRRSN
DPRKGNANSPGGGQNPKKSRRTVGAKSLEPTRTTRGRSSAAFAPDRRSRR
SFSGDPASALDDRGSGGGGSVSSSRLGRGRGRSSRQRAGDSGSAGARGGS
RGSRREGGSAGVGPGATRHPTKERNNYRRRQTHLEAAAAPSVAAGARSGP
LNGSAVGVSATARGRAGMKSGGGGDRKQRSCSSRSGGGVGVGSAQEGASS
YRFKTTLGQRSQQRPMAPLASPWTPREDAKPWERVGGRRSGHEQEYFDND
GLASSNSEPASSLGGGGKGFVSPLSPAGILHRISSNRRFSASGRAASPPA
AVLSTHVAVPPTTQWQATSPELHDEEAGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt