prot_L-elsbetiae_contig984.18786.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig984.18786.1
Unique Nameprot_L-elsbetiae_contig984.18786.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length288
Homology
BLAST of mRNA_L-elsbetiae_contig984.18786.1 vs. uniprot
Match: D7FIZ7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIZ7_ECTSI)

HSP 1 Score: 397 bits (1021), Expect = 3.070e-137
Identity = 202/280 (72.14%), Postives = 229/280 (81.79%), Query Frame = 0
Query:    8 PGKMGLMALAVLVPFAVLIGVATSGGATNGITSNAVDGVRSAGRRLQTANFSFATQLEMTICLAQDHGTDSATASGEQFKVAVMDFFELEDPAFIKVDEEVTRCLVDDWQRRISIYNTEKSGTGSAADVASAQVDRIYPQPKASAFFDAIATNINEQDPELSFPEGDLDLESLGFLVIWLDTNGDVVSTQGTTTSKNVVSIGGTDVWWPWWAWLIYAGVVLCCICPMLFFFFKWRRDKEAELDNYGGGSGKDMAAPAAPSATSSNPYGGHYSAEEHKSGK 287
            PGK+ L ALA L+P  VLIGV+TSG   NG TS AVDG   AGRRLQTA + FATQLEMTICL ++H +DSAT++ +Q KVAVM+ F +E    + VD+ +TRC VD+WQRR+SIYN     TGSAAD+ASAQVD+IYP    +AF D IAT+IN QD EL F   DLDL SLGFLVIWLD+NGDVV  QGTTTSK+VV+IGGTDVWWPWWAWLIYA VVLCCICPMLFFFFKWRRDKEAELD+YGGGSGKDM APA PSATSSNPYGG+YSAEE+KSGK
Sbjct:    7 PGKLVLKALAALIPLMVLIGVSTSGNGMNGATSKAVDG---AGRRLQTATYDFATQLEMTICLTEEHTSDSATSTTDQLKVAVMEIFGIESADDVVVDDSLTRCTVDNWQRRVSIYNRADE-TGSAADIASAQVDQIYPGALTTAFLDDIATSINAQDAELVFTGTDLDLLSLGFLVIWLDSNGDVVDNQGTTTSKDVVNIGGTDVWWPWWAWLIYAAVVLCCICPMLFFFFKWRRDKEAELDSYGGGSGKDMGAPAPPSATSSNPYGGNYSAEENKSGK 282          
BLAST of mRNA_L-elsbetiae_contig984.18786.1 vs. uniprot
Match: A0A835YQ20_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ20_9STRA)

HSP 1 Score: 112 bits (279), Expect = 4.470e-26
Identity = 68/183 (37.16%), Postives = 96/183 (52.46%), Query Frame = 0
Query:   63 QLEMTICLAQDHGTDSATASGEQFKVAVMDFFELEDPAFIKVDEEVTRCLVDD-WQRRISIYNTEKSGTGSAADVASAQVDRIYPQPKASAFFDAIATNINEQDPELSFPEGDLDLESLGFLVIWLD-TNGDVVSTQGTTTSKNVVSIGGTDVWWPWWAWLIYAGVVLCCICPMLFFFFKWRR 243
            Q  + +CL  D     AT +    + A      L     +K    V  C  +  WQ RIS++NT  +   SA+ +ASAQVD IY     + FF +++T + +           L LESLG+LV+WLD TNG    T G T+S + + IGGT V+WP W W +Y  VV+C +CP + F F +RR
Sbjct:   27 QAAIILCLKPDVTAPDATEA--MVEGAARSALGLSADVPVKASLAVDVCTANAAWQARISVWNTA-TAVNSASGIASAQVDGIYYN--RTLFFRSMSTGLTDAGATNVPDPSQLTLESLGYLVVWLDGTNGSSGGTTGGTSSNDTLEIGGTTVYWPGWMWAVYVAVVVCLVCPCMGFIFAYRR 204          
BLAST of mRNA_L-elsbetiae_contig984.18786.1 vs. uniprot
Match: A0A6H5JL50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL50_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.130e-11
Identity = 61/234 (26.07%), Postives = 106/234 (45.30%), Query Frame = 0
Query:   35 TNGITSNAVDGVRSAGRRLQTAN---FSFATQLEMTICLAQDHGTDSATASGEQFKVAVMDFFELEDPAFIKVD-----EEVTRCLVDDWQRRISIYNTEKSGTGSAADVASAQVDRIYPQPKASAFFDAIATNINEQDPELSFPEGDLDLESLGFLVIWLDTNGDVVSTQGTTTSKNVVSIGGTDVWWPWWAWLIYAGVVLCCICPMLFFFFKWRRDKEAELDNYGGGSGKDM 260
            ++G+ S+   G RS  R LQT +   F++ ++ +  +C A     +      +  +  +MD FE+E              EVT    D  +        E S T SAA +++ Q++ +    ++S F   +A+++  +D  LS     L   SLG++V++ D +  V +    +   + V+  G D WWPW   L++  V+LCCICP+    + +R          G G G  M
Sbjct:  182 SDGLVSSKKAGWRSR-RVLQTDDGDSFTYTSRTQFDLCAAPGSELEE-----DALRAGIMDVFEVEQEQTEGTTGTVEKREVTEFCDDGSEEWTIAIGNEPSDTQSAAVISAGQMELV----RSSEFTTLLASSL--EDSNLSVNPAGLTYSSLGYIVLY-DEDQAVTTANSDSLDSDFVAFRGPDQWWPWXXXLLFGLVLLCCICPLAACIYYYRPGLAGPPSPSGAGGGPGM 402          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig984.18786.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FIZ7_ECTSI3.070e-13772.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YQ20_9STRA4.470e-2637.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JL50_9PHAE2.130e-1126.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 217..239
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 15..26
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 32..216
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 240..287
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 27..31
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..31
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..31
score: 0.683
NoneNo IPR availableTMHMMTMhelixcoord: 217..239
NoneNo IPR availableTMHMMTMhelixcoord: 12..34

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig984contigL-elsbetiae_contig984:14361..19207 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig984.18786.1mRNA_L-elsbetiae_contig984.18786.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig984 13181..19338 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig984.18786.1 ID=prot_L-elsbetiae_contig984.18786.1|Name=mRNA_L-elsbetiae_contig984.18786.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=288bp
MSAGMASPGKMGLMALAVLVPFAVLIGVATSGGATNGITSNAVDGVRSAG
RRLQTANFSFATQLEMTICLAQDHGTDSATASGEQFKVAVMDFFELEDPA
FIKVDEEVTRCLVDDWQRRISIYNTEKSGTGSAADVASAQVDRIYPQPKA
SAFFDAIATNINEQDPELSFPEGDLDLESLGFLVIWLDTNGDVVSTQGTT
TSKNVVSIGGTDVWWPWWAWLIYAGVVLCCICPMLFFFFKWRRDKEAELD
NYGGGSGKDMAAPAAPSATSSNPYGGHYSAEEHKSGK*
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