prot_L-elsbetiae_contig9538.18520.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig9538.18520.1
Unique Nameprot_L-elsbetiae_contig9538.18520.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length172
Homology
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BLAST of mRNA_L-elsbetiae_contig9538.18520.1 vs. uniprot
Match: D7FJJ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJJ8_ECTSI)

HSP 1 Score: 265 bits (676), Expect = 3.510e-88
Identity = 138/171 (80.70%), Postives = 152/171 (88.89%), Query Frame = 0 
Query:    1 MDLPGPIRIMDEDVSHVAKQRELAADMAKSVYYITPKYAVKDVERYSDGLHSGGRRGQQSLSSQLSAGMKRYLPPELMDRSAMGATTSSGKLSGFKPLPAFDGKSLTALEDKERKSAETAGADKXXXXXDAGMMSDIEAEVXXXXXXDDYAVDHYESGDESAGDDEPAAVF 171
            MDLPGPIRI+++DVSHVAKQRELAADM+KS+YYITPKYAVKDVERYSDG+HSGG RGQ SL+SQLSAGMKR+LPPEL DR A+G T + GKL G KPLPAFDGKSLTALEDKERKSAET GA+K     DAGM+SD+EAEV  XXXX DYAVDHYESG+ES GDDEPAAVF
Sbjct:   15 MDLPGPIRILEDDVSHVAKQRELAADMSKSIYYITPKYAVKDVERYSDGVHSGGYRGQ-SLASQLSAGMKRHLPPELTDRPAIGTTAAGGKLPGLKPLPAFDGKSLTALEDKERKSAETGGAEKEKDKEDAGMLSDVEAEVEEXXXXXDYAVDHYESGNESGGDDEPAAVF 184
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9538.18520.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJJ8_ECTSI3.510e-8880.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024661DNA-directed RNA polymerase III, subunit Rpc31PFAMPF11705RNA_pol_3_Rpc31coord: 3..159
e-value: 1.2E-8
score: 35.5
IPR024661DNA-directed RNA polymerase III, subunit Rpc31PANTHERPTHR15367DNA-DIRECTED RNA POLYMERASE IIIcoord: 12..165

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9538contigL-elsbetiae_contig9538:5305..5820 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9538.18520.1mRNA_L-elsbetiae_contig9538.18520.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig9538 5029..6320 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig9538.18520.1 ID=prot_L-elsbetiae_contig9538.18520.1|Name=mRNA_L-elsbetiae_contig9538.18520.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=172bp
MDLPGPIRIMDEDVSHVAKQRELAADMAKSVYYITPKYAVKDVERYSDGL
HSGGRRGQQSLSSQLSAGMKRYLPPELMDRSAMGATTSSGKLSGFKPLPA
FDGKSLTALEDKERKSAETAGADKDKDKEDAGMMSDIEAEVEEEEQDDDY
AVDHYESGDESAGDDEPAAVF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024661RNA_pol_III_Rpc31