prot_L-elsbetiae_contig924.18258.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig924.18258.1
Unique Nameprot_L-elsbetiae_contig924.18258.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length517
Homology
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BLAST of mRNA_L-elsbetiae_contig924.18258.1 vs. uniprot
Match: D7G4V7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4V7_ECTSI)

HSP 1 Score: 217 bits (553), Expect = 1.380e-61
Identity = 121/194 (62.37%), Postives = 151/194 (77.84%), Query Frame = 0 
Query:  315 EEQERLDQIGRMIT-RRQSITSSGGSDRGPGEELEGGSVKTVYPREEDSRLLVRLQAFGLPVLVGTLLSGFTLVLFDVATTDLARRLAVLAFALEISSSTVLCLIMFRGQQLYSYATDVKPRARKFLRSMCNATILSLIMFSLGVVAFVVSFVVEASSEMGDSWLAVLAVVLFPTVLAAVLFAASTEQVRRFSL 507
            EEQ R+ ++  +I  RRQS+ SS       G+E    +V  ++  EEDSRLLVRL AF +P+LV TLLSGFTL+LFDVA TDLARRLAVL+F LE SSST+LCLI FRGQQLY+++TD+KP  R+FLR MCN T+L+L++FSLGV+AFVVSFVVEAS E+G  WLAVL +VL PT+LA ++F  ST QVRR S+
Sbjct:  233 EEQRRMSRVQELIRERRQSVNSS----EQLGDEAGEDTVFEIHKMEEDSRLLVRLSAFNVPILVATLLSGFTLLLFDVAKTDLARRLAVLSFGLETSSSTMLCLISFRGQQLYAHSTDIKPLTRRFLRKMCNVTVLALVLFSLGVIAFVVSFVVEASEELGVGWLAVLGLVLCPTMLAGLMFVISTVQVRRHSI 422
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig924.18258.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4V7_ECTSI1.380e-6162.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 190..234
NoneNo IPR availableCOILSCoilCoilcoord: 249..273
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 466..476
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 498..516
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 390..400
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 423..442
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..367
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 443..465
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 401..422
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 368..389
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 477..497
NoneNo IPR availableTMHMMTMhelixcoord: 445..467
NoneNo IPR availableTMHMMTMhelixcoord: 364..386
NoneNo IPR availableTMHMMTMhelixcoord: 401..420
NoneNo IPR availableTMHMMTMhelixcoord: 477..496

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig924contigL-elsbetiae_contig924:14402..21754 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig924.18258.1mRNA_L-elsbetiae_contig924.18258.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig924 14402..21754 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig924.18258.1 ID=prot_L-elsbetiae_contig924.18258.1|Name=mRNA_L-elsbetiae_contig924.18258.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=517bp
CFSTTRKAASTHQPSQLCRLKAGAYKHQPMASPTNSRVPRVLDSAPAAPD
SSTGKAQAATSGPAENGGMRILPADATAVADLARSPTAAPKTQPTRSTAS
LAWPSVAPAPAPAYDGTTDAAAPSPFRGAAASPLSPATPTTTTTTSALPS
LRSALRASSVASGGPASPNPAGPYRTGSPRGSSFFGGERASVLERRANEA
QAALETASQLEAEIAAVEGQVLQVERELESAQRAAASGGSYRGKGGAALA
AEEERLARKERLLREEKGQLREERLVILRSRSDQQRRGSEVAARPKRVSF
IMTQAHVDDPAEEREEQERLDQIGRMITRRQSITSSGGSDRGPGEELEGG
SVKTVYPREEDSRLLVRLQAFGLPVLVGTLLSGFTLVLFDVATTDLARRL
AVLAFALEISSSTVLCLIMFRGQQLYSYATDVKPRARKFLRSMCNATILS
LIMFSLGVVAFVVSFVVEASSEMGDSWLAVLAVVLFPTVLAAVLFAASTE
QVRRFSLPPACGDTTE*
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