prot_L-elsbetiae_contig9151.18178.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig9151.18178.1
Unique Nameprot_L-elsbetiae_contig9151.18178.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length402
Homology
BLAST of mRNA_L-elsbetiae_contig9151.18178.1 vs. uniprot
Match: D7FSD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSD8_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 1.990e-53
Identity = 132/282 (46.81%), Postives = 158/282 (56.03%), Query Frame = 0
Query:  134 SAVMFNAVATVCGARGRWHEALLALRMTERGGMAPSLXXXXXXXXXXXXXXXXXHAQRLLEDMRW-------GGGXXXXXXXXXXXXXXXXXXNNGRYAPPL--PDVYSYTSVIDACAKSGGQLERALEVFEDMRWANVRPSVVTFNTLILA-GGGGSGSPGRRGDWRRALSFVQEMAESGVRPDMYTVTVAVAACEAGGEWGEAAAVLKQM--------WAARAVLAQLTVVACGRAEDWRGGLEVVRGLERSGAPPGVPVYNALIEALVVRPQ-PQRNRQ 396
            S  +FN+V   CGA GRW EAL+ALR+T RGGMAP+           XXXXX  HA+RLL+DM+        GGG                          L  PDVYSYTSVIDACAKSG + +RAL+V EDMR A V PS+VT+NTLILA G G S +P    DWRR                              GEWGEAAA LK +        WA   V+AQLT++ACG+A DW+GGL+VVR +ER G  P V V+NALIEAL V PQ P+R+R+
Sbjct:  168 SPAIFNSVTAACGAAGRWEEALVALRLTARGGMAPTFIAYNATLGALXXXXXWKHARRLLKDMQQRASSPSTGGGDSSDSNPGLRERRARGLARTSPREERLRPPDVYSYTSVIDACAKSG-ERDRALKVLEDMRRAQVHPSLVTYNTLILACGAGDSETPLGGSDWRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEWGEAAAYLKGLRGGAGKDRWARNGVVAQLTILACGKANDWKGGLQVVREMERLGVRPKVDVFNALIEALGVGPQQPKRDRR 448          
BLAST of mRNA_L-elsbetiae_contig9151.18178.1 vs. uniprot
Match: A0A6H5JIW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIW0_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 1.220e-51
Identity = 138/282 (48.94%), Postives = 164/282 (58.16%), Query Frame = 0
Query:  134 SAVMFNAVATVCGARGRWHEALLALRMTERGGMAPSLXXXXXXXXXXXXXXXXXHAQRLLEDMRWGGGXXXXXXXXXXXXXXXXXXNNGR----YAP-----PLPDVYSYTSVIDACAKSGGQLERALEVFEDMRWANVRPSVVTFNTLILAGGGGSGSPGRRG-DWRRALSFVQEMAESGVRPDMYTVTVAVAACEAGGEWGEAAAVLKQM--------WAARAVLAQLTVVACGRAEDWRGGLEVVRGLERSGAPPGVPVYNALIEALVVRPQ-PQRNRQ 396
            S  +FN+V   CGA GRW EAL+ALR+T RGGMAP+      XXXXXXXXXXXXHA+RLL+DM+                         R     +P     P PDVYSYTSVIDACAKSG + +RAL+V EDMR A V PS+VT+N LILA G       R G DWRR                           EAGGEWGEAAA LK +        W    V+AQLT++ACG+A DW+GGL+VVR +ER G  P V V+NALIEAL V PQ P+R+R+
Sbjct:  402 SPAIFNSVTAACGAAGRWEEALVALRLTVRGGMAPTFIAYNAXXXXXXXXXXXXHARRLLKDMQQRASSPSTRGEDSSDSNPGLRERRARGMARTSPRKERLPPPDVYSYTSVIDACAKSG-ERDRALKVLEDMRRAQVHPSLVTYNALILACGTSDAKKPRGGSDWRRXXXXXXXXXXXXXXXXXXXXXXXXXXXEAGGEWGEAAAYLKGLRGGAGKDGWTRNGVVAQLTILACGKANDWKGGLQVVREMERLGVRPKVGVFNALIEALGVGPQQPKRDRR 682          
BLAST of mRNA_L-elsbetiae_contig9151.18178.1 vs. uniprot
Match: I0YUY6_COCSC (TPR-like protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YUY6_COCSC)

HSP 1 Score: 69.7 bits (169), Expect = 3.080e-9
Identity = 37/97 (38.14%), Postives = 53/97 (54.64%), Query Frame = 0
Query:  230 DVYSYTSVIDACAKSGGQLERALEVFEDMRWANVRPSVVTFNTLILAGGGGSGSPGRRGDWRRALSFVQEMAESGVRPDMYTVTVAVAACEA-GGEW 325
            D + YT ++   A+      +ALE F+ M  A +RP VV FN  I       G+ G+ GDW R L    +M +SGV+PD++T +   AAC+A G  W
Sbjct:   58 DRFLYTRLLSMSARQPNGAVKALEFFDRMCAARIRPDVVAFNAAI-------GAAGKAGDWERVLRLYADMQQSGVKPDVWTFSALTAACQACGNRW 147          
BLAST of mRNA_L-elsbetiae_contig9151.18178.1 vs. uniprot
Match: A0A7S1TX23_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TX23_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.730e-5
Identity = 48/160 (30.00%), Postives = 68/160 (42.50%), Query Frame = 0
Query:  229 PDVYSYTSVIDACAKSGGQLERALEVFEDMRWANVRPSVVTFNTLILAGGGGSGSPGRRGDWRRALSFVQEMA---ESGVRPDMYTVTVAVAACEAGGEWGEAAAVLKQMWAARAVLAQLTVVACGRAEDWRGGLEVVRGL-ERSGAPPGVPVYNALIEA 384
            P V +YT+ I ACAK GGQ ERAL + E+M+                    G           RAL  +++M    + GV P + T +        G   G+   + K +     V     + A GR  DWRG L ++  + E+ G  P V  YNA I+A
Sbjct:    7 PTVITYTAAISACAKGGGQWERALRLLEEMQEXXXXXXXXXXXXXXXXXXEGH---------ERALDAIEKMGGPKKHGVAPGVNTRS-----WRGGSRHGDGEKLDKDV-----VRYTKEISASGRRRDWRGALRLLEEMQEKHGLTPNVITYNAAIDA 147          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9151.18178.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FSD8_ECTSI1.990e-5346.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIW0_9PHAE1.220e-5148.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
I0YUY6_COCSC3.080e-938.14TPR-like protein n=1 Tax=Coccomyxa subellipsoidea ... [more]
A0A7S1TX23_9STRA2.730e-530.00Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 64..94
e-value: 2.6E-5
score: 22.1
coord: 232..265
e-value: 0.0012
score: 16.9
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 229..274
e-value: 1.5E-10
score: 41.1
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 172..198
e-value: 4.4E-4
score: 20.3
coord: 64..92
e-value: 0.003
score: 17.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 61..95
score: 10.216
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 230..265
score: 12.452
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 169..203
score: 9.043
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 96..130
score: 8.221
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 308..342
score: 6.533
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 266..307
score: 6.577
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 134..168
score: 8.177
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 26..60
score: 7.881
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..132
e-value: 1.1E-20
score: 76.3
coord: 279..396
e-value: 4.4E-15
score: 57.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 133..278
e-value: 3.2E-27
score: 97.1
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 287..386
coord: 5..199
coord: 229..274

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9151contigL-elsbetiae_contig9151:3154..7912 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9151.18178.1mRNA_L-elsbetiae_contig9151.18178.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig9151 3154..7912 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig9151.18178.1 ID=prot_L-elsbetiae_contig9151.18178.1|Name=mRNA_L-elsbetiae_contig9151.18178.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=402bp
ACCRGGQYRHVPILRREMAVANIPQTLKCYRLELEHFGNAGRWGSALERL
SELKEAGLTPDAKVYNGVLDAFAHSREWSRARGVLREMERAGHELHARSY
RGLVVSAANAGEWRVAWRAFREMAARGVEKSSRSAVMFNAVATVCGARGR
WHEALLALRMTERGGMAPSLIAYNATLSALGKAGRWEHAQRLLEDMRWGG
GGGGSGGGGRVGRGGGSNSNNGRYAPPLPDVYSYTSVIDACAKSGGQLER
ALEVFEDMRWANVRPSVVTFNTLILAGGGGSGSPGRRGDWRRALSFVQEM
AESGVRPDMYTVTVAVAACEAGGEWGEAAAVLKQMWAARAVLAQLTVVAC
GRAEDWRGGLEVVRGLERSGAPPGVPVYNALIEALVVRPQPQRNRQAATV
T*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf