prot_L-elsbetiae_contig8876.17900.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig8876.17900.1
Unique Nameprot_L-elsbetiae_contig8876.17900.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length433
Homology
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BLAST of mRNA_L-elsbetiae_contig8876.17900.1 vs. uniprot
Match: D7FJQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJQ5_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 7.650e-12
Identity = 76/109 (69.72%), Postives = 84/109 (77.06%), Query Frame = 0 
Query:  322 WLHNKKTCLIDLELYGLLCMSCFNQLITGVTWPPSLLKVTFGEYFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTIACRPNKPLPSWPGVQVCGVWSAYW 430
            W H K T  I    +GL   S FNQ ITGV WP SL+K+TFG+   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  +TIACRP++ LPSW GV+V GVW AYW
Sbjct:   21 WDHKKMTPYIQ-HFFGL--GSNFNQPITGVLWPASLVKITFGQCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQVTIACRPDQALPSWQGVEVFGVWRAYW 126
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8876.17900.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJQ5_ECTSI7.650e-1269.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 77..335
e-value: 1.0E-13
score: 52.4
IPR008615FNIPPFAMPF05725FNIPcoord: 188..231
e-value: 4.1E-5
score: 23.6
coord: 232..273
e-value: 5.9E-7
score: 29.6
coord: 275..315
e-value: 1.5E-9
score: 37.8
NoneNo IPR availablePANTHERPTHR32134:SF91FNIP REPEAT-CONTAINING PROTEIN-RELATEDcoord: 198..415
NoneNo IPR availablePANTHERPTHR32134UNCHARACTERIZEDcoord: 64..316
NoneNo IPR availablePANTHERPTHR32134:SF91FNIP REPEAT-CONTAINING PROTEIN-RELATEDcoord: 64..316
NoneNo IPR availablePANTHERPTHR32134UNCHARACTERIZEDcoord: 198..415
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 65..410

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8876contigL-elsbetiae_contig8876:1350..2648 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8876.17900.1mRNA_L-elsbetiae_contig8876.17900.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig8876 1172..3707 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig8876.17900.1 ID=prot_L-elsbetiae_contig8876.17900.1|Name=mRNA_L-elsbetiae_contig8876.17900.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=433bp
MGAPARETCSAKRLSSTRVPVVRARRVVWNLSASALLRIGDVLSKVNYFS
FDDGFNGDVRGVAWPHELKVLIFGLAFNQPITEVAWPASLEMLMFTGDFK
HTLHGVSWPVSLQTLSFWGVDQSLVEISWPPSLHTLIFQGVIPNESIAGI
SWPVSLKRLGLGRGFNQPIDAGIAWPPSLTCLDLGADFNQPIAAVNWPTS
LTTLDLGFSFNQAIGLVTWPRSLQKLTLSCKFNQPIRGAQWPASLQQLVF
GDYFNQPIVGAWPPALEKLAFGRDFNQPIAKVAWPPSLQKLTFGGNFNQP
IADASWPDSLQEISFTTERGEWLHNKKTCLIDLELYGLLCMSCFNQLITG
VTWPPSLLKVTFGEYFDQSLVGVVWPAPLKELAFSRDFSLPSESFEWPSS
LEKLTIACRPNKPLPSWPGVQVCGVWSAYWDS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR008615FNIP