prot_L-elsbetiae_contig8749.17784.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig8749.17784.1
Unique Nameprot_L-elsbetiae_contig8749.17784.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length213
Homology
BLAST of mRNA_L-elsbetiae_contig8749.17784.1 vs. uniprot
Match: A0A6H5JPS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPS5_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 2.750e-56
Identity = 87/125 (69.60%), Postives = 105/125 (84.00%), Query Frame = 0
Query:    1 MSGSGNTRDVEMGPIWSHADAKTKAEVYIDRRPWLKWTGHWSTTVPCQMSTINVCNRTSLEGFVRGENRDVDVGPIWSQQDAVRKARAFIQEHPSLEWNGHWNTTQIDGRSTSVIGVRLKRGSQD 125
            MSGS + RDVE+GPIW+H DA TKA+ YID+ PWLKWTGHWSTTVP  MSTINV N TSLEGFVRGE+R+VD+GPIW+QQDAV KARAFI+E+P LEW GHWNTT+I G+ + ++ VRL+   Q+
Sbjct:  133 MSGSAHARDVEIGPIWNHGDANTKAKAYIDKHPWLKWTGHWSTTVPGVMSTINVRNLTSLEGFVRGEHRNVDMGPIWNQQDAVNKARAFIEEYPFLEWTGHWNTTEI-GKMSHIV-VRLEERGQE 255          
BLAST of mRNA_L-elsbetiae_contig8749.17784.1 vs. uniprot
Match: A0A6H5JVK0_9PHAE (GBP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVK0_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 5.740e-24
Identity = 56/117 (47.86%), Postives = 71/117 (60.68%), Query Frame = 0
Query:    4 SGNTRDVEMGPIWSHADAKTKAEVYIDRRPWLKWTGHWSTTVPCQMSTINVCNRTSLEGFVRGENRDVDVGPIWSQQDAVRKARAFIQEHPSLEWNGHWNTTQIDGRSTSVIGVRLK 120
            S  T DV +GPIW  ADA+ +A  +I   P  +WTG W+TT   + S I V ++ +     R    DV+VGPIW Q DA R+AR FI EHP  EW G W TT  +G++ SVIGVR K
Sbjct:  674 SRRTHDVNVGPIWDQADAERRAREFIAEHPDQEWTGQWTTTSEGKASVIGVRDKAAAATRSR-RTHDVNVGPIWDQADAERRAREFIAEHPDQEWTGQWTTTS-EGKA-SVIGVRDK 787          
BLAST of mRNA_L-elsbetiae_contig8749.17784.1 vs. uniprot
Match: A0A7X9ZPX2_9SPHN (Uncharacterized protein n=1 Tax=Sphingomonas sp. G-3-2-10 TaxID=2728838 RepID=A0A7X9ZPX2_9SPHN)

HSP 1 Score: 77.0 bits (188), Expect = 3.970e-13
Identity = 47/109 (43.12%), Postives = 60/109 (55.05%), Query Frame = 0
Query:    3 GSGNTRDVEMGPIWSHADAKTKAEVYIDRRPWLKWTGHWSTTVPCQMSTINVCN-RTSLEGFVRGENRDV----DVGPIWSQQDAVRKARAFIQEHPSLEWNGHWNTTQ 106
            G   TRDVE+GPIW+  DA+TK      R     WTG+W+T      + ++VC  R    G  R + RDV    +VGPIW+Q DAV K  A  +E  + EW G W TTQ
Sbjct:  214 GRDGTRDVEVGPIWNQRDAETKCNNKA-REIGADWTGNWNTV----RAGVSVCGMRMRGGGGGRWDQRDVLRNIEVGPIWNQNDAVAKCNAKGRELRA-EWTGQWRTTQ 316          
BLAST of mRNA_L-elsbetiae_contig8749.17784.1 vs. uniprot
Match: A0A6H5K385_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K385_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.090e-11
Identity = 37/56 (66.07%), Postives = 40/56 (71.43%), Query Frame = 0
Query:   65 RGENRDVDVGPIWSQQDAVRKARAFIQEHPSLEWNGHWNTTQIDGRSTSVIGVRLK 120
            R   RDVDVGPI SQ  A RKAR +I EHP LEW GHW TT + GR+ SVIGVR K
Sbjct:  399 RRPTRDVDVGPILSQDHAERKAREYIAEHPDLEWTGHWTTTSV-GRA-SVIGVRDK 452          
BLAST of mRNA_L-elsbetiae_contig8749.17784.1 vs. uniprot
Match: UPI0009A3E877 (E3 ubiquitin-protein ligase LRSAM1-like n=1 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A3E877)

HSP 1 Score: 67.8 bits (164), Expect = 2.220e-11
Identity = 30/65 (46.15%), Postives = 44/65 (67.69%), Query Frame = 0
Query:  150 SPSSPECVGDE------CVVCWQQQANCTLVPCGHLCCCYEQCGAIVEKCPICRADIQQRIKTYR 208
            +PSSP  V +E      CVVC ++++    +PCGH+CCC + CGA +  CP+CR DI+Q+I+ YR
Sbjct:   33 APSSPSAVSEEVLAQSECVVCLERESQMIFLPCGHVCCC-QTCGASLYTCPLCRKDIEQKIRMYR 96          
BLAST of mRNA_L-elsbetiae_contig8749.17784.1 vs. uniprot
Match: Q8VX96_PINPS (Putative RING zinc finger protein (Fragment) n=1 Tax=Pinus pinaster TaxID=71647 RepID=Q8VX96_PINPS)

HSP 1 Score: 64.7 bits (156), Expect = 2.070e-10
Identity = 23/49 (46.94%), Postives = 35/49 (71.43%), Query Frame = 0
Query:  161 CVVCWQQQANCTLVPCGHLCCCYEQCGAIVEKCPICRADIQQRIKTYRH 209
            C++C +Q+ N   VPCGH+CCC   C + + +CP+CR DI+Q ++ YRH
Sbjct:   33 CIICLEQEYNVVFVPCGHMCCC-TSCSSRLSECPLCRGDIEQVVRAYRH 80          
BLAST of mRNA_L-elsbetiae_contig8749.17784.1 vs. uniprot
Match: D8LDN0_ECTSI (Zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN0_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 2.630e-10
Identity = 27/52 (51.92%), Postives = 41/52 (78.85%), Query Frame = 0
Query:  157 VGDE---CVVCWQQQANCTLVPCGHLCCCYEQCGAIVEKCPICRADIQQRIK 205
            +GD+   C+VC++++ +CTLVPCGH CCC   C A  E+CP+CRAD++Q+I+
Sbjct:  108 LGDDDNTCIVCFERKVDCTLVPCGHHCCCLT-CAAQFEQCPVCRADVEQKIR 158          
BLAST of mRNA_L-elsbetiae_contig8749.17784.1 vs. uniprot
Match: A0A401SUK9_CHIPU (Uncharacterized protein (Fragment) n=4 Tax=Chiloscyllium TaxID=34767 RepID=A0A401SUK9_CHIPU)

HSP 1 Score: 69.3 bits (168), Expect = 3.690e-10
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 0
Query:  150 SPSSPECVGDE------CVVCWQQQANCTLVPCGHLCCCYEQCGAIVEKCPICRADIQQRIKTYR 208
            +PSSP  V +E      CVVC +Q++    +PCGH+CCC + CGA +  CP+CR DI+Q+I+ YR
Sbjct:  682 TPSSPAAVSEEVLAQSECVVCLEQESQMIFLPCGHVCCC-QTCGAELSTCPLCRKDIEQKIRIYR 745          
BLAST of mRNA_L-elsbetiae_contig8749.17784.1 vs. uniprot
Match: A0A813VUU4_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A813VUU4_9BILA)

HSP 1 Score: 64.7 bits (156), Expect = 4.370e-10
Identity = 25/47 (53.19%), Postives = 35/47 (74.47%), Query Frame = 0
Query:  161 CVVCWQQQANCTLVPCGHLCCCYEQCGAIVEKCPICRADIQQRIKTY 207
            C +CW++++NC  +PCGH+  C EQC   V+KCP+CRA IQQ+ K Y
Sbjct:   63 CSICWERKSNCAFIPCGHVTTC-EQCSNDVDKCPVCRATIQQKQKLY 108          
BLAST of mRNA_L-elsbetiae_contig8749.17784.1 vs. uniprot
Match: A0A059AZ41_EUCGR (RING-type domain-containing protein n=1 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059AZ41_EUCGR)

HSP 1 Score: 63.9 bits (154), Expect = 5.620e-10
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 0
Query:  159 DECVVCWQQQANCTLVPCGHLCCCYEQCGAIVEKCPICRADIQQRIKTYRH 209
            D CV+C +Q+ N   VPCGH+CCC   C   +  CP+CR  I+Q +KT+RH
Sbjct:   44 DLCVICLEQEYNSVFVPCGHMCCC-TTCSLQLTNCPLCRRQIEQAVKTFRH 93          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8749.17784.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPS5_9PHAE2.750e-5669.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVK0_9PHAE5.740e-2447.86GBP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7X9ZPX2_9SPHN3.970e-1343.12Uncharacterized protein n=1 Tax=Sphingomonas sp. G... [more]
A0A6H5K385_9PHAE1.090e-1166.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0009A3E8772.220e-1146.15E3 ubiquitin-protein ligase LRSAM1-like n=1 Tax=Rh... [more]
Q8VX96_PINPS2.070e-1046.94Putative RING zinc finger protein (Fragment) n=1 T... [more]
D8LDN0_ECTSI2.630e-1051.92Zinc finger protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A401SUK9_CHIPU3.690e-1047.69Uncharacterized protein (Fragment) n=4 Tax=Chilosc... [more]
A0A813VUU4_9BILA4.370e-1053.19Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
A0A059AZ41_EUCGR5.620e-1049.02RING-type domain-containing protein n=1 Tax=Eucaly... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.1490.230coord: 5..57
e-value: 1.3E-11
score: 45.6
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 159..202
e-value: 1.1E-9
score: 38.0
NoneNo IPR availableGENE3D3.30.1490.230coord: 64..120
e-value: 3.9E-10
score: 40.9
NoneNo IPR availablePANTHERPTHR14879CASPASE REGULATOR, RING FINGER DOMAIN-CONTAININGcoord: 120..207
NoneNo IPR availablePANTHERPTHR14879:SF5E3 UBIQUITIN-PROTEIN LIGASE CBLAcoord: 120..207
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 158..204
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 148..208
e-value: 2.6E-12
score: 48.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 161..197
score: 8.89

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8749contigL-elsbetiae_contig8749:3924..6265 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8749.17784.1mRNA_L-elsbetiae_contig8749.17784.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig8749 928..7457 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig8749.17784.1 ID=prot_L-elsbetiae_contig8749.17784.1|Name=mRNA_L-elsbetiae_contig8749.17784.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=213bp
MSGSGNTRDVEMGPIWSHADAKTKAEVYIDRRPWLKWTGHWSTTVPCQMS
TINVCNRTSLEGFVRGENRDVDVGPIWSQQDAVRKARAFIQEHPSLEWNG
HWNTTQIDGRSTSVIGVRLKRGSQDGAHTDSPGPSGGASAAPSAPSAAPS
PSSPECVGDECVVCWQQQANCTLVPCGHLCCCYEQCGAIVEKCPICRADI
QQRIKTYRHGCS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING