prot_L-elsbetiae_contig8377.17378.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig8377.17378.1
Unique Nameprot_L-elsbetiae_contig8377.17378.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length302
Homology
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BLAST of mRNA_L-elsbetiae_contig8377.17378.1 vs. uniprot
Match: D8LU53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU53_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 3.440e-22
Identity = 54/69 (78.26%), Postives = 64/69 (92.75%), Query Frame = 0 
Query:  237 EIIRDIFAEEVWFDMTTIRSRFFDCPTEEIKMKALTIMAMEARAAPAMKRKKMNNMRAAAK---RKPSF 302
            EIIRDIFAEEVWFDMT IRSRFFDCP+E+++MKALTI+AMEAR+AP+MKRKK+NN+RAA K   RKPS+
Sbjct:  432 EIIRDIFAEEVWFDMTAIRSRFFDCPSEDLRMKALTIIAMEARSAPSMKRKKINNIRAATKAKKRKPSY 500
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BLAST of mRNA_L-elsbetiae_contig8377.17378.1 vs. uniprot
Match: A0A6H5KS00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS00_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.810e-21
Identity = 53/68 (77.94%), Postives = 63/68 (92.65%), Query Frame = 0 
Query:  238 IIRDIFAEEVWFDMTTIRSRFFDCPTEEIKMKALTIMAMEARAAPAMKRKKMNNMRAAAK---RKPSF 302
            I+RDIFAEEVWFDMT IRSRFFDCP+E++KMKALTI+AMEAR+AP+MKRKK+NN+RAA K   RKPS+
Sbjct:  851 ILRDIFAEEVWFDMTAIRSRFFDCPSEDLKMKALTIIAMEARSAPSMKRKKINNIRAATKAKKRKPSY 918
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8377.17378.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LU53_ECTSI3.440e-2278.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KS00_9PHAE1.810e-2177.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 43..75
e-value: 1.4E-7
score: 29.3
coord: 79..111
e-value: 3.8E-5
score: 21.6
coord: 7..40
e-value: 3.5E-6
score: 24.9
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 110..144
score: 9.591
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 5..39
score: 11.257
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 40..74
score: 11.531
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 75..109
score: 10.435
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 145..179
score: 7.256
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 215..249
score: 7.728
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 180..214
score: 6.862
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..85
e-value: 3.2E-24
score: 87.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 86..299
e-value: 7.6E-35
score: 122.7
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 12..161
e-value: 3.7E-8
score: 33.0
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 1..122
coord: 108..241

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8377contigL-elsbetiae_contig8377:2612..8465 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8377.17378.1mRNA_L-elsbetiae_contig8377.17378.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig8377 2612..8465 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig8377.17378.1 ID=prot_L-elsbetiae_contig8377.17378.1|Name=mRNA_L-elsbetiae_contig8377.17378.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=302bp
GIVPDVVCYGSAIQACADAGMSNEALSLMRRMSEEGLLPDKTAFNAAIIS
CGEKGQWEKALDLLGEMRDAGLRPDQNSYRFAMKACSAGGRWERALLLLQ
EMEEDGSTPDTAAFETALDALRNAAQWEKAKELISDMDELGVPPTEACFA
SAIAACVEVGQWREAATARKLMGYYGLQPELETYKSIIKACLVGKEFNMA
QTTLFDIQTSGKRPDQETWDLLVEICAKLDRWDAALEIIRDIFAEEVWFD
MTTIRSRFFDCPTEEIKMKALTIMAMEARAAPAMKRKKMNNMRAAAKRKP
SF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long