prot_L-elsbetiae_contig8274.17276.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig8274.17276.1
Unique Nameprot_L-elsbetiae_contig8274.17276.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length847
Homology
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BLAST of mRNA_L-elsbetiae_contig8274.17276.1 vs. uniprot
Match: D7G5K5_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K5_ECTSI)

HSP 1 Score: 384 bits (985), Expect = 1.560e-110
Identity = 250/371 (67.39%), Postives = 272/371 (73.32%), Query Frame = 0 
Query:   40 GVVVVPPLAGGRLAEVERVEEQGVPVVATAVPFVTATAPFDHVSFFRDMKLIWKNAQKFNHDGSPLWIAAEHFKQQLDRLYKERLLSVIQERTPALPRQTMEDFLATPTPWEVLCVACGANADPEVKIKKTSTKKGXXXXXXXXXXXXXXA--EEVWPALRCCICRRPKHVECLLLPGQARKRHGVWTCPTCKHQPFSPLGIPPIFPXXXXXXXXXXXXXXXXXXXAAAIAGLESTRTPASPAQGPAGQEN--IEASSTSAFAGANGSRSAGNGSRPSTPSSSPPKGPWGGGGEGHP--GGRNRSASVGSGYXXXXXXXXXXX-ESSRRTGRQRVAKSFGDEFDETPLYRKPSGYRDPSIAAAAALFRPAA 403
            G +   P AGG     E  EEQG+ VVATAVPF TATAPFDHVSFFRDMKLIWKNAQKFNHDGSPLW+AAEHFK QLDRLYKERLLSV+QERTPALPRQTMEDFLATP PWEVLC ACGANADPE KIKKT  KKG    XXXXXXXXXX   EEVWPALRC ICRRP+HVECLLLPGQARKRHGVWTCPTCKHQPFSPLG+PP  P  XXXXXXXXXXXXXXXXX       +    P   A  P  +E   +E ++ + F  +NG+ +AG    P+T  SSP KG    GG+G+P  GGRNRS SVGSGY            E SRRTGRQRVAK FGDEFDE PL+RK + +      AAA +  PAA
Sbjct: 1111 GPLPAAPAAGGHAEGNEEQEEQGLSVVATAVPFATATAPFDHVSFFRDMKLIWKNAQKFNHDGSPLWVAAEHFKNQLDRLYKERLLSVVQERTPALPRQTMEDFLATPPPWEVLCCACGANADPEAKIKKTPIKKGKGSKXXXXXXXXXXXXXEEVWPALRCFICRRPRHVECLLLPGQARKRHGVWTCPTCKHQPFSPLGLPPRIPKHXXXXXXXXXXXXXXXXXXXXX---DVIPMPPKDALQPGAKEEHRLEVAAAAPFGESNGAVAAG---VPTTTPSSPSKG----GGDGNPAAGGRNRSTSVGSGYSVGDGGGDGGSGEVSRRTGRQRVAKKFGDEFDEIPLFRKSASHHK----AAAPVATPAA 1467
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BLAST of mRNA_L-elsbetiae_contig8274.17276.1 vs. uniprot
Match: A0A6H5J8B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8B2_9PHAE)

HSP 1 Score: 376 bits (966), Expect = 4.500e-108
Identity = 239/356 (67.13%), Postives = 263/356 (73.88%), Query Frame = 0 
Query:   40 GVVVVPPLAGGRLAEVERVEEQGVPVVATAVPFVTATAPFDHVSFFRDMKLIWKNAQKFNHDGSPLWIAAEHFKQQLDRLYKERLLSVIQERTPALPRQTMEDFLATPTPWEVLCVACGANADPEVKIKKTSTKKGXXXXXXXXXXXXXXAE----EVWPALRCCICRRPKHVECLLLPGQARKRHGVWTCPTCKHQPFSPLGIPPIFPXXXXXXXXXXXXXXXXXXXAAAIAGLESTRTPASPAQGPAGQEN-IEASSTSAFAGANGSRSAGNGSRPSTPSSSPPKGPWGGGGEGHP--GGRNRSASVGSGYXXXXXXXXXXX-ESSRRTGRQRVAKSFGDEFDETPLYRKPSGY 387
            G +   P  GG     E  EEQGV VVAT VPF TATAPFDHVSFFRDMKLIWKNAQKFNHDGSPLW+AAEHFK QLDRLYKERLLSV+QERTPALPRQTMEDFLATP PWEVLC ACGANADPE KIKKT  KKG     XXXXXXXXX      EVWPALRC ICRRP+HVECLLLPGQARKRHGVWTCPTCKHQPFSPLG+PP  P   XXXXXXXXXXXXXXXX   +  ++    P    Q  A +E+ +E ++ + F  +NG+ +A   S P+   SSP KG  GG G+G+P  GGRNRS SVGSGY            + SRRTGRQRVAK FGDEFDE PL+RK + +
Sbjct:  515 GPLPAAPATGGHAEGTEEQEEQGVSVVATGVPFATATAPFDHVSFFRDMKLIWKNAQKFNHDGSPLWVAAEHFKNQLDRLYKERLLSVVQERTPALPRQTMEDFLATPPPWEVLCGACGANADPEAKIKKTPIKKGKGSKKXXXXXXXXXXXXXXXEVWPALRCFICRRPRHVECLLLPGQARKRHGVWTCPTCKHQPFSPLGLPPRIPKHQXXXXXXXXXXXXXXXXXXDLIPMQ----PKDALQPGAKEEHPLEVAAAAPFGESNGAVAA---SVPTAAPSSPSKG--GGCGDGNPAAGGRNRSTSVGSGYSVGDGGVDGGSGDVSRRTGRQRVAKKFGDEFDEIPLFRKSASH 861
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8274.17276.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5K5_ECTSI1.560e-11067.39Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5J8B2_9PHAE4.500e-10867.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036427Bromodomain-like superfamilyGENE3D1.20.920.10coord: 76..138
e-value: 3.9E-7
score: 31.6
IPR036427Bromodomain-like superfamilySUPERFAMILY47370Bromodomaincoord: 83..123

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8274contigL-elsbetiae_contig8274:2365..7048 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8274.17276.1mRNA_L-elsbetiae_contig8274.17276.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig8274 2365..7048 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig8274.17276.1 ID=prot_L-elsbetiae_contig8274.17276.1|Name=mRNA_L-elsbetiae_contig8274.17276.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=847bp
RDVANGSLDTHGGGGGGGVGDRVSFAGEAGQDVGNSGHGGVVVVPPLAGG
RLAEVERVEEQGVPVVATAVPFVTATAPFDHVSFFRDMKLIWKNAQKFNH
DGSPLWIAAEHFKQQLDRLYKERLLSVIQERTPALPRQTMEDFLATPTPW
EVLCVACGANADPEVKIKKTSTKKGKGSKKAAAAAAAAAAEEVWPALRCC
ICRRPKHVECLLLPGQARKRHGVWTCPTCKHQPFSPLGIPPIFPPPPPQQ
NQPPSAAAASPRRAAAIAGLESTRTPASPAQGPAGQENIEASSTSAFAGA
NGSRSAGNGSRPSTPSSSPPKGPWGGGGEGHPGGRNRSASVGSGYGFGDG
VGDGGGESSRRTGRQRVAKSFGDEFDETPLYRKPSGYRDPSIAAAAALFR
PAAAPAYPDAASRQASVEEESAASQPAGQEKRGQGLLDVGVEEMAHAGRK
ADELAAAAAVKEEIPAGGGDKAVDDTCFDVGSTSSPPPQIIGGVADGEQN
RHGVSERAEGGGSSETKTRAPEPSRAGFFDTSSVGPASCVVDAPARTVAE
GGAEVEPFGAGGEGTNGAPPMVASSSPASGAGSTGGAGEESSANRRAQAS
AATAATGVTAAEAALTASKPGLSPARPSSTSPPPSAPPTAAATVEPTESN
GAVQSPQPLGGTVEPAPKIEPALAEIPVATAAAARTLRVDTGTAVSGRQR
SPTASSSASGAKSSDAKARSTVAAGPKKGGSKKGGRAPPQGAGGGSAGGL
VRDVSKGEDADAAKGPKIKVPRAELLGAVVARLSVRREFPEEEFAEIDEE
FMWSDDDGGSCDDMSESDREDGEEEDDEEEGEAEDGQDRESAEAKEE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036427Bromodomain-like_sf