prot_L-elsbetiae_contig8260.17263.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig8260.17263.1
Unique Nameprot_L-elsbetiae_contig8260.17263.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length568
Homology
BLAST of mRNA_L-elsbetiae_contig8260.17263.1 vs. uniprot
Match: D7G8C1_ECTSI (Hypothetical leucine rich repeat zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C1_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 3.850e-55
Identity = 233/560 (41.61%), Postives = 271/560 (48.39%), Query Frame = 0
Query:    1 LTCRGAWQCTQHPSVETLSITLTLLPGPGPIIAPEAQKTRXXXXXXXXXXXXXXXXXTSDSRDKQXXXXXXXXXXXXXXXXXXXXXXXATGGEKRGE-------PQWACARCTCLNAERRSTCQACRTPRGVE---TPAP----SPPASTP-SXXXXXXXXXXXRSSVSPSGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAVPPSGPLRRLNLELAAALPEAVEAAXXXXXXXXXXXXXXXXXXXXXXXXXSHASVAGFAFPLRRLAPLLPPGLLALDVWSSNAPSVPCWMQQRQQHQQRHGGVCGTGAXXXXXXXXXXXXXXXSWSVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASGDGDNGAPPNDGGRGVLVPAGPGDLMGLSQACPSLQELMIAGDPDHAASLV---TSAVRIRGRGADAHKTTAAAGVHATAAAVAYFFRNCRRTKAADYAAAAVPGRVDXXXXXXX----------GFGNGYPRGPPASSSLRVLGIFDCPSLPPLAVLKAVAIEGGAGLENLAVGFSKP 532
            LT RGAW C QHPSVETL+ITL+LLPGP PI  P  +K RXXXXXXXXX         ++   +                        A  G + GE        QWAC+RCT LNAERRSTCQACRTPR      TP P    SPPAS P             R   SPSG                                        PAVPPSG LRRL LEL  A    + A                          S A+ A  AFPLRRLAPLLPPGL +L+VWS+NA  VP  +Q+      R   +   G                  S +              XXXXXXXXXXXXXXXXXXXXXXX  GD   G        GV V AGPGDL+ +SQA PSLQEL+++GDP+ AA+      S VR    GADAH TTA AGVHATAAA+AYF  +C  +               XXXXXXX           F +     P   S LR+L IFDCPS+PP+AVL+A+A++GGAGL+++AVG S P
Sbjct:  227 LTSRGAWHCAQHPSVETLAITLSLLPGPEPI-PPAPEKPRXXXXXXXXXHRGDQQHRDAEGEAR------------------------AAAGVRNGEGVAGAAAEQWACSRCTLLNAERRSTCQACRTPRSTREPPTPPPRPGTSPPASGPLPVSPGSSNGGRRRRGRSPSGS----------------PSRSRSPAARKTPTTPECAPFPLPAVPPSGRLRRLCLELQPAAAGGLGAVQDDGGGVRSNPSNRA----------SPAAAARCAFPLRRLAPLLPPGLTSLEVWSANARPVPRSVQRDATSGDRKRPI---GRRLGRRGGSSSGGAWRMTSAAADGDGETPAGIEGAXXXXXXXXXXXXXXXXXXXXXXXXXGDASEGVA-----SGVAVLAGPGDLLSVSQASPSLQELVVSGDPEQAAAAAGQSPSGVR----GADAHTTTATAGVHATAAAIAYFL-SCLGSAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSSFDSAGTTRPSPPSPLRLLAIFDCPSVPPMAVLEALAVQGGAGLDHVAVGVSHP 722          
BLAST of mRNA_L-elsbetiae_contig8260.17263.1 vs. uniprot
Match: A0A6H5JVX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVX9_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 9.350e-24
Identity = 83/163 (50.92%), Postives = 106/163 (65.03%), Query Frame = 0
Query:  381 GVLVPAGPGDLMGLSQACPSLQELMIAGDPDHAASLVTSAVRIRGRGADAHKTTAAAGVHATAAAVAYFFRNCRRTKAADYAAAAVPGRVDXXXXXXXG--------FGNGYPRGPPASSSLRVLGIFDCPSLPPLAVLKAVAIEGGAGLENLAVGFSKPLPP 535
            GV+V AGPGDL+ +SQA PSLQEL+++GDP+ AA+   S   +RG  ADAH T A AGVHATAAA+A FF +C  +               XXXXXXX         F +     P   S LR+L IFDCPS+PP+AVL+A+A++GGAGL+++AVG SK  PP
Sbjct:   53 GVVVLAGPGDLLSVSQASPSLQELVVSGDPEQAAAAGPSPSGVRG--ADAHTTMATAGVHATAAAIA-FFLSCLGSAPXXXXXXXXXXXXXXXXXXXXXXXXXRFSRFDSPATTRPSPPSPLRLLAIFDCPSVPPMAVLEALAVQGGAGLDHVAVGVSKSPPP 212          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8260.17263.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8C1_ECTSI3.850e-5541.61Hypothetical leucine rich repeat zinc finger prote... [more]
A0A6H5JVX9_9PHAE9.350e-2450.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 98..122
e-value: 0.0061
score: 25.8
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 100..119
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 94..125
score: 9.066

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8260contigL-elsbetiae_contig8260:123..3002 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8260.17263.1mRNA_L-elsbetiae_contig8260.17263.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig8260 123..3002 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig8260.17263.1 ID=prot_L-elsbetiae_contig8260.17263.1|Name=mRNA_L-elsbetiae_contig8260.17263.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=568bp
LTCRGAWQCTQHPSVETLSITLTLLPGPGPIIAPEAQKTRRRGGGGGETA
GMQQRGGTSDSRDKQREAPGPAAAACGSGGGSGGGGGGATGGEKRGEPQW
ACARCTCLNAERRSTCQACRTPRGVETPAPSPPASTPSSPRHPPPRSSPR
SSVSPSGRRRRRQRQGRGRSPSRSRSRSRSRSPAREKPAPECVPLPLPAV
PPSGPLRRLNLELAAALPEAVEAAASAAAAVAAVEAGGGGGGGGGGGGGS
HASVAGFAFPLRRLAPLLPPGLLALDVWSSNAPSVPCWMQQRQQHQQRHG
GVCGTGAAAGRRRGYGRGGGNQSWSVSSAGNDGEEASAASEVAGSRSGGG
GKGGPKLGGGGGGGASGDGDNGAPPNDGGRGVLVPAGPGDLMGLSQACPS
LQELMIAGDPDHAASLVTSAVRIRGRGADAHKTTAAAGVHATAAAVAYFF
RNCRRTKAADYAAAAVPGRVDDDDTGGGGFGNGYPRGPPASSSLRVLGIF
DCPSLPPLAVLKAVAIEGGAGLENLAVGFSKPLPPPPSQLTGSGSSSGGG
GGGGGGGGGVRPEERGVG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2