prot_L-elsbetiae_contig8212.17218.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig8212.17218.1
Unique Nameprot_L-elsbetiae_contig8212.17218.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length551
Homology
BLAST of mRNA_L-elsbetiae_contig8212.17218.1 vs. uniprot
Match: D7FM12_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM12_ECTSI)

HSP 1 Score: 343 bits (879), Expect = 3.600e-106
Identity = 249/592 (42.06%), Postives = 291/592 (49.16%), Query Frame = 0
Query:    2 PSLKRLDLAGLVKVDDEVLKALASTLSLSHVDLSR-------------------------------------------AHHVSVTGVSALAAASPELECVSLHGIVGVVDGAVRALCDACPKLRHVNVSMTRVTDRGLRRLAVKDSLRWVNIRCCSGLFDDGPTRKVLAAFRSRLSTPKHPRDRGTVLGMERPQTQLRARPPSRSPRRPPPGDGGSGCRGGVDDGAQMGCPGVGGKAGGARRPRFPSSGSXXXXXXNAHHCRGDVVPLGAGXXXXXXXXXXXXXXAAMKVDAVECCAGEGSSEGKLPPSVSSPRREREAASNPAIETSPQGSEASAREAGTKHAHAAARPAEVPAVEAPASTMTSTELEPPATAPPAXXXXXXXXXXXXXXXXXXXVAAAAMPPAGAXXXXXSAAPCRADPLPLLPAGVGNLSLGQHRRRVGTQRRAPPPSSSLKAVGTTPWDSCDLTREQLRSRDERHYCCGEGESGRGXXRDGEEEATAPGVVVPFDWDTIPRGS-VGGLGAWRGFRGLSGDLVRRVIQELHPYAQVEFRAESDPLLGPPTRKNNHGYLVHTSRWGQAWVEFEVDDQGCV 549
            PSL+RLDLAGLVKVDD+VL+ALASTLSL+H+D+SR                                           AH VSV+GVSALA  SPEL C+SLHG   + DGAVRALCDACP+LRH+N+S+TRVT+R LR LA+KDSLRWVN+RCCSG+ +D  T K+LA FRSRLS PKHPRDRGTVLGMERP+ Q R R PS S R+P     G+   G  +D    GC G  G+ G  RR                                                                                          EA+ R+ G  H        E+ A EA A   T+ E E                           V + A  PAGA        P     L  LPAGVG+LSLG+HRRR                 GT           Q   R    +  G G  G    R  EEEA     VVPFDWDT+PRGS VG LG+W+GFRGLSGDLV+ +I+ELHP+AQVEFR ESD L GP +RKN HGYLVHTS++GQAWVEFEVD QGCV
Sbjct:  266 PSLRRLDLAGLVKVDDDVLRALASTLSLTHIDISRFHGNIRDVLDRHHPESRCPRHAHTANPRLPTHGAPQPGLVRHRAHRVSVSGVSALAVGSPELACISLHG-TALADGAVRALCDACPRLRHINLSLTRVTERSLRLLAMKDSLRWVNVRCCSGIGNDAVTAKILANFRSRLSPPKHPRDRGTVLGMERPEPQSRTRAPSCSRRKPL----GANSSGRSED--SSGCGGYQGERGKGRR------------------------------------------------------------------------------------------EAAIRQEGNGH--------ELVAEEASAIQATAAEEE--------------------------AVPSLAGEPAGASSRDHPPRPXXXXXL--LPAGVGDLSLGRHRRRGXXXXX-------XXREGTXXXXXXXXXXXQDGGRG---FAKGRGXXGE---RRVEEEA-----VVPFDWDTVPRGSGVGVLGSWKGFRGLSGDLVKNIIRELHPHAQVEFRPESDFLFGPHSRKNTHGYLVHTSKFGQAWVEFEVDGQGCV 706          
BLAST of mRNA_L-elsbetiae_contig8212.17218.1 vs. uniprot
Match: A0A6H5KWK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWK9_9PHAE)

HSP 1 Score: 335 bits (858), Expect = 2.130e-104
Identity = 257/581 (44.23%), Postives = 307/581 (52.84%), Query Frame = 0
Query:    2 PSLKRLDLAGLVKVDDEVLKALASTLSLSHVDLSRAHHVSVTGVSALAAASPELECVSLHGIVGVVDGAVRALCDACPKLRHVNVSMTRVTDRGLRRLAVKDSLRWVNIRCCSGLFDDGPTRKVLAAFRSRLSTPKHPRDRGTVLGMERPQTQLRARPPSRSPRRPPPGDGGSGCRGGVDDGA--QMGCP-------GVGGKAGGARRPRFPSS----------GSXXXXXXNA----HHCRGDVVPLGAGXXXXXXXXXXXXXXAAMKVDAVECCAGEGSSEGKLPPSVSSPRREREAASNPAIETSPQGSEASAREAGTKHAHAAARPAE-VPAVEAPASTMTSTELEPPA---------------TAPPAXXXXXXXXXXXXXXXXXXXVAAAAMPPAGAXXXXXS------AAPCRADPLPLLPAGVGNLSLGQHRRRVGTQRRAPPPSSSLKAVGTTPWDSCDLTREQLRSRDERHYCCGEGESGRGXXRDGEEEATAPGVVVPFDWDTIPRGS-VGGLGAWRGFRGLSGDLVRRVIQELHPYAQVEFRAESDPLLGPPTRKNNHGYLVHTSRWGQ 536
            PSL+RLDLAGLVKVDD+VL+AL+STLSL+H+D+SRAH VSV+GVSALA  SPEL C+SLHGI  +VD AVRALCDACP+LRH+N+S+TRVT+R LR LA KDSLRWVN+RCCSG+ +D  T KVLA FRSRLS PKHPRDRGTVLGMERP+ Q R   PS S RR P G   SG  G +D G     G P        +  +A  A R   PSS          G XXXX   A     +C G +V   A                          AG  +  G+ PPS       R      A+ +  +G E + R +  +     A PA+  PA      +   T L P A               T                        A+AA   A       S       A  R  P PLLP GVG+LSLG+HRR  G  R +P    + +  G+T     D  R   + R            G G  R  E E     VVVPFDWDT+PRGS VG LG+W+GFRGLSGDLV+ VI+ELHP+AQVEFR   D + GP +R N HGYLV  SR  Q
Sbjct:   48 PSLRRLDLAGLVKVDDDVLRALSSTLSLTHIDISRAHRVSVSGVSALAVGSPELACISLHGIA-LVDEAVRALCDACPRLRHINLSLTRVTERSLRLLATKDSLRWVNVRCCSGIGNDAVTAKVLADFRSRLSPPKHPRDRGTVLGMERPEPQSRTPAPSCS-RREPLGANSSG--GSLDSGCGGYQGPPDDVGQDLAIRAQAALALRVSSPSSDRLHQLAPGNGGXXXXTKTASSDVEYCNGSIVRGDAPIDPNGK-------------------AGGATKGGRAPPSAEGGYTRRLDTPGAALVSFGEGGEIAPRPSCRRPGGIRASPAKPTPAERLAGDSSQGTTLSPVAPLLLASTSPAPVDLDTGERGKGRRGAAIRQEGKGHALAEEASAAQSTAAEEEAVPSLAGEPAGASSRDHPPPLLPTGVGDLSLGRHRRH-GESRGSPSSEGTKRGEGSTGTGFQDGGRGVAKGR------------GGGGDRRVEGE-----VVVPFDWDTVPRGSGVGVLGSWKGFRGLSGDLVKNVIRELHPHAQVEFRPGYDVVFGPHSRTNTHGYLVAKSRAAQ 587          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8212.17218.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FM12_ECTSI3.600e-10642.06Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KWK9_9PHAE2.130e-10444.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 1..26
e-value: 8.2
score: 15.2
coord: 78..102
e-value: 0.16
score: 21.1
coord: 27..51
e-value: 500.0
score: 1.3
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..135
e-value: 8.5E-17
score: 63.1
NoneNo IPR availablePANTHERPTHR13318UNCHARACTERIZEDcoord: 3..116
NoneNo IPR availablePANTHERPTHR13318:SF26F-BOX/LRR-REPEAT PROTEIN 12coord: 3..116
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 1..121

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8212contigL-elsbetiae_contig8212:802..4679 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8212.17218.1mRNA_L-elsbetiae_contig8212.17218.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig8212 802..4679 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig8212.17218.1 ID=prot_L-elsbetiae_contig8212.17218.1|Name=mRNA_L-elsbetiae_contig8212.17218.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=551bp
LPSLKRLDLAGLVKVDDEVLKALASTLSLSHVDLSRAHHVSVTGVSALAA
ASPELECVSLHGIVGVVDGAVRALCDACPKLRHVNVSMTRVTDRGLRRLA
VKDSLRWVNIRCCSGLFDDGPTRKVLAAFRSRLSTPKHPRDRGTVLGMER
PQTQLRARPPSRSPRRPPPGDGGSGCRGGVDDGAQMGCPGVGGKAGGARR
PRFPSSGSSSSGGGNAHHCRGDVVPLGAGGSGGDGGGSAAAAVAAMKVDA
VECCAGEGSSEGKLPPSVSSPRREREAASNPAIETSPQGSEASAREAGTK
HAHAAARPAEVPAVEAPASTMTSTELEPPATAPPAPPAPPAAAAAPAAAP
AAPAVAAAAMPPAGAGAAEASAAPCRADPLPLLPAGVGNLSLGQHRRRVG
TQRRAPPPSSSLKAVGTTPWDSCDLTREQLRSRDERHYCCGEGESGRGRG
RDGEEEATAPGVVVPFDWDTIPRGSVGGLGAWRGFRGLSGDLVRRVIQEL
HPYAQVEFRAESDPLLGPPTRKNNHGYLVHTSRWGQAWVEFEVDDQGCVA
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR032675LRR_dom_sf