prot_L-elsbetiae_contig817.17166.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig817.17166.1
Unique Nameprot_L-elsbetiae_contig817.17166.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length622
Homology
BLAST of mRNA_L-elsbetiae_contig817.17166.1 vs. uniprot
Match: A0A6H5JRK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK9_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 1.270e-44
Identity = 219/640 (34.22%), Postives = 262/640 (40.94%), Query Frame = 0
Query:    8 FVLVWCWLSSLVVCVSWCVCKCAKPGSGEGSSSGESDLKSVDGYANAVQATFCGTLASVVCVSD------------EEATPTSQPCTPQPGSDSIVLGGAAIGSSNNSDGRNSAALATSDQTAAVSPAVNDAAAQ-----GAGSNQSAFSAIFRRYLTAMAVPPATPASSAATDDASLGQC--SHYPQQQ-----TGGSDISGISTAFCSTATDEGESSXXXXXXXVAEPQVWDEEEKRSENVAAVAPPQRLSRPAGFRLFRNGGGDTDGPRGGRDGTGSPPPALAISWRARVWASVRSVGGGAGGNYPVGSVQGAGGGVPSNIS--APERSSEEALQINRDRRGAPVAPVAGSTQGRGEDRAMVETMSHRRRTAR--RVAGSRAAGEGGRRSCDGEFRAPGPATRDDGRDNCGDVAAGSGRDGGGAGVPAGVTESDARVGNHDGRATAGHLLLPEVVAAGADAGALADEYAPSGRSSCRESEEEPEGARQEVEAMVIRRTAEHPLTGGGGTTGPLTAFSGFSTGRDVAAAARTSSAIPPASQHRREERGPGDAGNGRGGXXAGGAEEIEAGGGGDCVSPLGEPELKSPVLPRARVLWRAFSEVDHDTITENHRLAGLRHLARFAPAPGIENPPMCYVPL 619
            F +VWCWLSS++VCVSWCVCKC +P S   SSS  ++ K VD YA AV+ATFCGTLASVVC SD            EE  P S PCTPQPGS SI   G+    S+ + G  +  +A +  TA   PA  + AA      GA S+ SAFS IFRR LTA A+PP TP     T   SL  C  +   QQQ     +GG   S  + A C T    G S             VW EE K+SEN +        +RP G    R  GG + G                  W  R WA       G   ++  G   G GGG  S +S   P+RSS E          +P   +  +    G    +V+ +SHRRR AR  R+AG   A E GR S DG                       S   G  AG   G              ATA   + PE          LA    P                                        G L    G +                             DAGNG G       E  E  G     +P G+ E  SP LPRAR+LWRAFSEVDH+ I +NHR A  RHLAR  PAPG+ NP MCY P+
Sbjct:  190 FSVVWCWLSSVLVCVSWCVCKCTRPTSRHSSSSC-TENKHVDTYAGAVRATFCGTLASVVCASDGATAEKNGTNGQEEGFPASLPCTPQPGS-SI---GSTSSRSSETLGDEATTVAHAGVTADAPPAAVNGAAPTNIDGGAVSSYSAFSEIFRRALTATALPPDTP-----TSHGSLSVCHGAQLRQQQHGLDGSGGDGNSDENPALCPTGDGGGSSGDIAL--------VWGEE-KQSENGSHTT--TDAARPRGRPFLRPSGGASSG----------------TPWMHRFWARFS----GDSCSHEAGRRWGTGGGHASGVSDGPPQRSSRE--------NDSPEGSLGEAAAFEGHH-GLVDALSHRRRVARWARLAGRSRAQERGRGSSDGHLTFAAXXXXXXXXXXXXXXXXXSRSRGNAAGCVVG--------------ATADRQVSPEPAV-------LATPTPPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSQAERGFLPRGGGIAE----------------------------DAGNGDG-------ERGEERG---SFAP-GDTESMSPGLPRARMLWRAFSEVDHNKIEDNHRRAAQRHLARLDPAPGVRNPSMCYGPI 719          
BLAST of mRNA_L-elsbetiae_contig817.17166.1 vs. uniprot
Match: D7FU87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU87_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 5.580e-44
Identity = 216/643 (33.59%), Postives = 260/643 (40.44%), Query Frame = 0
Query:    8 FVLVWCWLSSLVVCVSWCVCKCAKPGSGEGSSSGESDLKSVDGYANAVQATFCGTLASVVCVSD------------EEATPTSQPCTPQPGSDSIVLGGAAIGSSNNSDGR--NSAALATSDQTAAVSPAVNDAAAQ-----GAGSNQSAFSAIFRRYLTAMAVPPATPASSAATDDASLGQCSHYPQQQTG----GSDISGIST--AFCSTATDEGESSXXXXXXXVAEPQVWDEEEKRSENVAAVAPPQRLSRPAGFRLFRNGGGDTDGPRGGRDGTGSPPPALAISWRARVWASVRSVGGGAGGNYPVGSVQGAGGGVPSNIS--APERSSEEALQINRDRRGAPVAPVAGSTQGRGEDRAMVETMSHRRRTARR--VAGSRAAGEGGRRSCDGEFRAPGPATRDDGRDNCGDVAAGSGRDGGGAGVPAGVTESDARVGNHDGRATAGHLLLPEVVAAGADAGALADEYAPSGRSSCRESEEEPEGARQEVEA-MVIRRTAEHPLTGGGGTTGPLTAFSGFSTGRDVAAAARTSSAIPPASQHRREERGPGDAGNGRGGXXAGGAEEIEAGGGGDCVS-PLGEPELKSPVLPRARVLWRAFSEVDHDTITENHRLAGLRHLARFAPAPGIENPPMCYVPL 619
            F +VWCWLSS+ VCVSWCVCKCA+P S   SSS  ++ K VD YA AV+ATFCGTLASVVCVSD            E+  P S PCTPQPGS        +IGS+++S+     +AA+  +  TA   PA    AA      GA S+ SAFS +FRR LTA A+PP TP    A    S G  +   QQQ G    G D S      A C T    G S             VW EE K+SEN +        +RP G    R+ GG +D                   W  R WA  RS G      +  G   G GGG  S +S  +PERSS E                            + + +SHRRR A R  +AG   A E GR                                GG   + +                + G+       AAG   GA AD+               PE A     A                                  A  +R     PP      E+ G GD   G                  D  S P G+ E   P LPRAR+LWRAFSEVDH+ I +NHR A  RHLARF PAPG+ NPPMCY P+
Sbjct:  107 FSMVWCWLSSVFVCVSWCVCKCARPNSRHSSSSC-TENKHVDTYAGAVRATFCGTLASVVCVSDGGTAGKNDTNGQEDGFPASLPCTPQPGS--------SIGSTSSSENLVDEAAAVTHAGVTADAPPAAIKGAAPVNIDGGAASSYSAFSGMFRRALTATALPPDTPT---AHGSPSAGHGAQLRQQQHGLDGNGGDGSSDQNPLALCPTGDGGGSSGDIAL--------VWGEE-KQSENGSHTT--TDAARPRGRPFLRSSGGASD----------------RTPWTHRFWA--RSSGDSC--RHEAGRRWGTGGGPASGVSNGSPERSSGEXXXXXX---------XXXXXXXXXXHHGLFDALSHRRREAHRARLAGGSRAQERGR--------------------------------GGDGHLTSAXXXXXXXXXXXXXXRSRGN-------AAGCVVGATADQQV------------SPEPAVLATPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEISRVERGCPPRGGGVAEDAGNGDEERGE-----------------DRGSFPPGDTESIPPGLPRARMLWRAFSEVDHNKIEDNHRRAAQRHLARFGPAPGVRNPPMCYGPM 629          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig817.17166.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JRK9_9PHAE1.270e-4434.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FU87_ECTSI5.580e-4433.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..16
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..621
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..21
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.942
NoneNo IPR availableTMHMMTMhelixcoord: 7..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig817contigL-elsbetiae_contig817:17379..19693 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig817.17166.1mRNA_L-elsbetiae_contig817.17166.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig817 16521..20226 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig817.17166.1 ID=prot_L-elsbetiae_contig817.17166.1|Name=mRNA_L-elsbetiae_contig817.17166.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=622bp
MHTRAMFFVLVWCWLSSLVVCVSWCVCKCAKPGSGEGSSSGESDLKSVDG
YANAVQATFCGTLASVVCVSDEEATPTSQPCTPQPGSDSIVLGGAAIGSS
NNSDGRNSAALATSDQTAAVSPAVNDAAAQGAGSNQSAFSAIFRRYLTAM
AVPPATPASSAATDDASLGQCSHYPQQQTGGSDISGISTAFCSTATDEGE
SSGGGGGGGVAEPQVWDEEEKRSENVAAVAPPQRLSRPAGFRLFRNGGGD
TDGPRGGRDGTGSPPPALAISWRARVWASVRSVGGGAGGNYPVGSVQGAG
GGVPSNISAPERSSEEALQINRDRRGAPVAPVAGSTQGRGEDRAMVETMS
HRRRTARRVAGSRAAGEGGRRSCDGEFRAPGPATRDDGRDNCGDVAAGSG
RDGGGAGVPAGVTESDARVGNHDGRATAGHLLLPEVVAAGADAGALADEY
APSGRSSCRESEEEPEGARQEVEAMVIRRTAEHPLTGGGGTTGPLTAFSG
FSTGRDVAAAARTSSAIPPASQHRREERGPGDAGNGRGGRGAGGAEEIEA
GGGGDCVSPLGEPELKSPVLPRARVLWRAFSEVDHDTITENHRLAGLRHL
ARFAPAPGIENPPMCYVPLEG*
back to top