prot_L-elsbetiae_contig8157.17153.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig8157.17153.1
Unique Name	prot_L-elsbetiae_contig8157.17153.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	101

Homology

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BLAST of mRNA_L-elsbetiae_contig8157.17153.1 vs. uniprot
Match: D8LE80_ECTSI (60S ribosomal protein L41 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE80_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 2.970e-48
Identity = 95/100 (95.00%), Postives = 99/100 (99.00%), Query Frame = 0

Query:    1 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEYLPVALMRLNHGNAQLTSGCLADAGVEEADTLTLLLDVKGGMRAKWRKKRXXXXXXXXXXXRQRAR 100
            MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQE+LP ALMRLNHGNAQL+SGCLADAG+EEADTLTLLLDV+GGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:    1 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQLSSGCLADAGIEEADTLTLLLDVRGGMRAKWRKKRXXXXXXXXXXXRQRAR 100

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BLAST of mRNA_L-elsbetiae_contig8157.17153.1 vs. uniprot
Match: A0A836CFJ6_9STRA (60S ribosomal protein L41 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFJ6_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.020e-23
Identity = 69/101 (68.32%), Postives = 79/101 (78.22%), Query Frame = 0

Query:    1 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEYLPVALMRLNHGNAQLTSGC-LADAGVEEADTLTLLLDVKGGMRAKWRKKRXXXXXXXXXXXRQRAR 100
            MQIFVKTL   SL L+V+P +++  V A VE +E+LP AL RL+ G+ QL S   L  AG+EEADTLTLLL V GGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:    1 MQIFVKTLARDSLVLDVAPTSTVGDVMAMVEDREFLPAALQRLSCGSTQLASTTTLEAAGIEEADTLTLLLSVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 101

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BLAST of mRNA_L-elsbetiae_contig8157.17153.1 vs. uniprot
Match: A0A6A4FFT9_9STRA (60S ribosomal protein L41 n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A4FFT9_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 5.880e-18
Identity = 65/100 (65.00%), Postives = 73/100 (73.00%), Query Frame = 0

Query:    1 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEYLPVALMRLNHGNAQLTSGCLADAGVEEADTLTLLLDVKGGMRAKWRKKRXXXXXXXXXXXRQRAR 100
            MQ+FV+TL G+ L L V+   S+ +VK AVE  EY+P    RL     QLTSG LAD  V E DTL +LLDV GGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:  831 MQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYIPN--FRLVCAGKQLTSGSLADYAVGECDTLKMLLDVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 928

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BLAST of mRNA_L-elsbetiae_contig8157.17153.1 vs. uniprot
Match: A0A7S4DB66_HETAK (60S ribosomal protein L41 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB66_HETAK)

HSP 1 Score: 80.5 bits (197), Expect = 1.150e-17
Identity = 61/100 (61.00%), Postives = 69/100 (69.00%), Query Frame = 0

Query:    1 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEYLPVALMRLNHGNAQLTSGCLADAGVEEADTLTLLLDVKGGMRAKWRKKRXXXXXXXXXXXRQRAR 100
            MQIFVK   G S    VS   S+    A VE Q +LP  L+R    + QLT+G LAD GVEE  T+++LL V GGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:    1 MQIFVKDPSGRSTAYTVSKDASVEGFNAQVENQTFLPADLVRFVCESKQLTTGSLADFGVEEGVTISMLLHVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 100

[Close]

BLAST of mRNA_L-elsbetiae_contig8157.17153.1 vs. uniprot
Match: A0A6G0NVC9_9STRA (60S ribosomal protein L41 n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0NVC9_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.480e-17
Identity = 65/100 (65.00%), Postives = 73/100 (73.00%), Query Frame = 0

Query:    1 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEYLPVALMRLNHGNAQLTSGCLADAGVEEADTLTLLLDVKGGMRAKWRKKRXXXXXXXXXXXRQRAR 100
            MQ+FV+TL G+ L L V+   S+ +VK AVE  EY+P    RL     QLTSG LAD  V E DTL +LLDV GGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:  710 MQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYIPN--FRLVCAGKQLTSGSLADYVVGECDTLKMLLDVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 807

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BLAST of mRNA_L-elsbetiae_contig8157.17153.1 vs. uniprot
Match: A0A7S2HF29_9STRA (60S ribosomal protein L41 n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HF29_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 4.650e-17
Identity = 57/100 (57.00%), Postives = 70/100 (70.00%), Query Frame = 0

Query:    1 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEYLPVALMRLNHGNAQLTSGCLADAGVEEADTLTLLLDVKGGMRAKWRKKRXXXXXXXXXXXRQRAR 100
            MQIF+    G S    V    S+ +VKA +E +E++P  L+RL +G   L  G L   GV+E DT+T+LL+V GGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:    1 MQIFIAGAQGPSTAYTVDSDASVESVKAMIENREFVPSELIRLVNGATALEGGSLLGNGVQEDDTITMLLEVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 100

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BLAST of mRNA_L-elsbetiae_contig8157.17153.1 vs. uniprot
Match: A0A7S4T995_9STRA (60S ribosomal protein L41 n=2 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S4T995_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.420e-16
Identity = 56/100 (56.00%), Postives = 71/100 (71.00%), Query Frame = 0

Query:    1 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEYLPVALMRLNHGNAQLTSGCLADAGVEEADTLTLLLDVKGGMRAKWRKKRXXXXXXXXXXXRQRAR 100
            MQI V +  G S    V   T++T +K+ +E QE++P  L++L  G+A+L  G LA  GVEE + L L L++ GGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:   17 MQIIVNSPAGTSTAYAVEATTTVTDLKSMIENQEFIPGHLIKLVSGDAELLEGTLAGNGVEEDEELDLCLEIAGGMRAKWRKKRXXXXXXXXXXXRQRAR 116

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BLAST of mRNA_L-elsbetiae_contig8157.17153.1 vs. uniprot
Match: A0A7S4T8Y9_9STRA (60S ribosomal protein L41 n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T8Y9_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.930e-16
Identity = 58/100 (58.00%), Postives = 71/100 (71.00%), Query Frame = 0

Query:    1 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEYLPVALMRLNHGNAQLTSGCLADAGVEEADTLTLLLDVKGGMRAKWRKKRXXXXXXXXXXXRQRAR 100
            MQIF+    G S    V    SI +VKA +E +E++P  L+RL +G + L  G L   GV+E DT+T+LL+V GGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:   89 MQIFIAGAQGPSTAYTVDSDASIESVKAMIENKEFVPADLIRLVNGASVLEGGSLLGNGVQEDDTITMLLEVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 188

[Close]

BLAST of mRNA_L-elsbetiae_contig8157.17153.1 vs. uniprot
Match: A0A7S0KA44_9STRA (60S ribosomal protein L41 n=2 Tax=Leptocylindrus TaxID=163515 RepID=A0A7S0KA44_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.730e-16
Identity = 59/101 (58.42%), Postives = 71/101 (70.30%), Query Frame = 0

Query:    1 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEYLPVALMRLNHGNAQ-LTSGCLADAGVEEADTLTLLLDVKGGMRAKWRKKRXXXXXXXXXXXRQRAR 100
            MQIFV    G++   EV   TS+ ++K  VE Q ++P  L RL   N+  LT G LA  G+EE DT+TL+LDV+GGMR KWRKK XXXXXXXXXXXRQRAR
Sbjct:    1 MQIFVSYPQGSTRAYEVDSDTSVESLKLMVENQTFIPSGLCRLVDANSTTLTGGSLAAMGIEEDDTVTLMLDVEGGMRRKWRKKXXXXXXXXXXXXRQRAR 101

[Close]

BLAST of mRNA_L-elsbetiae_contig8157.17153.1 vs. uniprot
Match: A0A7S3Y2M4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2M4_HETAK)

HSP 1 Score: 76.6 bits (187), Expect = 9.410e-16
Identity = 45/84 (53.57%), Postives = 53/84 (63.10%), Query Frame = 0

Query:    1 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEYLPVALMRLNHGNAQLTSGCLADAGVEEADTLTLLLDVKGGMRAKWRKKR 84
            MQIFVK   G S    VS   S+    A VE Q +LP  L+R    + QLT+G LAD GVEE  T+++LL V GGMRAKWRKKR
Sbjct:    1 MQIFVKDPSGRSTAYTVSKDASVEGFNAQVENQTFLPADLVRFVCESKQLTTGSLADFGVEEGVTISMLLHVNGGMRAKWRKKR 84

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig8157.17153.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig8157.17153.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LE80_ECTSI	2.970e-48	95.00	60S ribosomal protein L41 n=2 Tax=Ectocarpus TaxID...	[more]
A0A836CFJ6_9STRA	2.020e-23	68.32	60S ribosomal protein L41 n=1 Tax=Tribonema minus ...	[more]
A0A6A4FFT9_9STRA	5.880e-18	65.00	60S ribosomal protein L41 n=9 Tax=Phytophthora Tax...	[more]
A0A7S4DB66_HETAK	1.150e-17	61.00	60S ribosomal protein L41 n=1 Tax=Heterosigma akas...	[more]
A0A6G0NVC9_9STRA	1.480e-17	65.00	60S ribosomal protein L41 n=1 Tax=Phytophthora fra...	[more]
A0A7S2HF29_9STRA	4.650e-17	57.00	60S ribosomal protein L41 n=1 Tax=Helicotheca tame...	[more]
A0A7S4T995_9STRA	1.420e-16	56.00	60S ribosomal protein L41 n=2 Tax=Ochrophyta TaxID...	[more]
A0A7S4T8Y9_9STRA	1.930e-16	58.00	60S ribosomal protein L41 n=3 Tax=Ditylum brightwe...	[more]
A0A7S0KA44_9STRA	2.730e-16	58.42	60S ribosomal protein L41 n=2 Tax=Leptocylindrus T...	[more]
A0A7S3Y2M4_HETAK	9.410e-16	53.57	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000626	Ubiquitin domain	SMART	SM00213	ubq_7	coord: 1..71 e-value: 2.1E-7 score: 40.6
IPR000626	Ubiquitin domain	PFAM	PF00240	ubiquitin	coord: 3..71 e-value: 1.7E-8 score: 34.1
IPR000626	Ubiquitin domain	PROSITE	PS50053	UBIQUITIN_2	coord: 1..75 score: 14.164
IPR007836	Ribosomal protein L41	PFAM	PF05162	Ribosomal_L41	coord: 76..98 e-value: 7.3E-8 score: 32.3
None	No IPR available	GENE3D	3.10.20.90		coord: 1..99 e-value: 3.9E-16 score: 60.6
None	No IPR available	PANTHER	PTHR10666:SF328	RIBOSOMAL PROTEIN S27A	coord: 1..96
None	No IPR available	PANTHER	PTHR10666	UBIQUITIN	coord: 1..96
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 1..76

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig8157	contig	L-elsbetiae_contig8157:5231..5533 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig8157.17153.1	mRNA_L-elsbetiae_contig8157.17153.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig8157 5231..5533 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig8157.17153.1 ID=prot_L-elsbetiae_contig8157.17153.1|Name=mRNA_L-elsbetiae_contig8157.17153.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEYLPVALMRLNHGNAQL
TSGCLADAGVEEADTLTLLLDVKGGMRAKWRKKRMRRLRRKRRKMRQRAR
*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000626	Ubiquitin_dom
IPR007836	Ribosomal_L41
IPR029071	Ubiquitin-like_domsf