prot_L-elsbetiae_contig8156.17150.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig8156.17150.1
Unique Nameprot_L-elsbetiae_contig8156.17150.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length392
Homology
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BLAST of mRNA_L-elsbetiae_contig8156.17150.1 vs. uniprot
Match: A0A6H5KHP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHP2_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 2.460e-30
Identity = 183/396 (46.21%), Postives = 206/396 (52.02%), Query Frame = 0 
Query:    1 MTRGCGILAAAAFATAATWPSPTPGRGSRSSACGFVAPSPPSAALPAGSSARAGLSWCGSRSAAAERRPSTGGREGTSLRALRAGAAFSSSXXXXAHSRLSGGEGRGLGRARGDAIDPPCLCGTRGGCNSRFGRATLVALSAAASSXXXXXXXXLGRLGLDPESIARAREAAKNDDYDWFMEFIGGDEEDGDESSRRSEGTAGARNTLNRDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSGNGRRPADGSREDPAFTDSSIAXXXXXXXXPTGRDFRGPPNGADGG----RRGSGPRAPADSAYDYDLDEEFEQEPGRGGWDYDPGLSAEIGARRRDVEVDKVRAKTKAASMRMPLEEDLEAVEDGVGGEGEDPQPDLVAATGFEPVDSEK 392
            MTRG G+L AAA AT ATWPS TPGR S SSA GF+A +P SA                                                                            CL   +   +S   RA L+ L + A+  XXXXXXX    GLD ES+ARAREAAK DDYDWFMEFIG DEE+                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                        XXXXXXXX  GR F+ P +G  G     RR   P +PAD+AYDYDLDEE++QEPGRGGWDYDPGLSA IGARRRDV+VDKVRAK K+ASMR PLE+D +++E     E E  Q     A  FEPV S+K
Sbjct:    1 MTRGRGVLLAAAVATTATWPSSTPGR-STSSAWGFLAAAPRSA---------------------------------------------------------------------------NCLDANKS-TSSTSSRARLLLLPSRATGGXXXXXXXXXX-GLDAESVARAREAAKKDDYDWFMEFIGVDEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------XXXXXXXXXXXXXXXXXGRGFQ-PLSGGVGTTGEMRRERRP-SPADTAYDYDLDEEYDQEPGRGGWDYDPGLSAGIGARRRDVQVDKVRAKAKSASMRRPLEDDQQSME----AEQEIRQEFAGRAAEFEPVGSKK 295
[Close]
BLAST of mRNA_L-elsbetiae_contig8156.17150.1 vs. uniprot
Match: D7G0C6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0C6_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 5.380e-24
Identity = 62/92 (67.39%), Postives = 72/92 (78.26%), Query Frame = 0 
Query:  301 ADSAYDYDLDEEFEQEPGRGGWDYDPGLSAEIGARRRDVEVDKVRAKTKAASMRMPLEEDLEAVEDGVGGEGEDPQPDLVAATGFEPVDSEK 392
            AD+AYDYDLDEE++QEPGRGGWDYDPGLSA IGARRRDV+VDKVRAKTK+ASMR PLE+D +++E       E  Q     A  FEPV S+K
Sbjct:   10 ADTAYDYDLDEEYDQEPGRGGWDYDPGLSAGIGARRRDVQVDKVRAKTKSASMRRPLEDDQQSME------AEQEQEFAGRAVEFEPVGSKK 95
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8156.17150.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KHP2_9PHAE2.460e-3046.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0C6_ECTSI5.380e-2467.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..392
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..16
score: 0.519

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8156contigL-elsbetiae_contig8156:604..6800 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8156.17150.1mRNA_L-elsbetiae_contig8156.17150.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig8156 604..6800 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig8156.17150.1 ID=prot_L-elsbetiae_contig8156.17150.1|Name=mRNA_L-elsbetiae_contig8156.17150.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=392bp
MTRGCGILAAAAFATAATWPSPTPGRGSRSSACGFVAPSPPSAALPAGSS
ARAGLSWCGSRSAAAERRPSTGGREGTSLRALRAGAAFSSSSSSSAHSRL
SGGEGRGLGRARGDAIDPPCLCGTRGGCNSRFGRATLVALSAAASSGDNG
GDGGLGRLGLDPESIARAREAAKNDDYDWFMEFIGGDEEDGDESSRRSEG
TAGARNTLNRDSNNGGVVEGGGGGGSRSRRGDATPPSSPRRRSPSGNGRR
PADGSREDPAFTDSSIAAPRRRRPPPTGRDFRGPPNGADGGRRGSGPRAP
ADSAYDYDLDEEFEQEPGRGGWDYDPGLSAEIGARRRDVEVDKVRAKTKA
ASMRMPLEEDLEAVEDGVGGEGEDPQPDLVAATGFEPVDSEK
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