prot_L-elsbetiae_contig8100.17097.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig8100.17097.1
Unique Nameprot_L-elsbetiae_contig8100.17097.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length519
Homology
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BLAST of mRNA_L-elsbetiae_contig8100.17097.1 vs. uniprot
Match: D8LPS0_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPS0_ECTSI)

HSP 1 Score: 511 bits (1316), Expect = 9.410e-167
Identity = 366/505 (72.48%), Postives = 399/505 (79.01%), Query Frame = 0 
Query:   15 GGAVTDAAVTAFARGCRGLRRLCLRGVVGVPPPLGAPGIMAVCCHCRELELLDLGEVWGLEDSALVGFHDHQMEKLEKVVLMDCPNITGAGVQWLVAGCPALSALNVKGTKATLTALNIIKERYPYSRIKARNTGLSDGVGDKFFGLAPLPKMRERIAIKKYASLHEGAKKLQGCFRQGAETMKARQEVQARRYRLREGKAARMVVRLLRXXXXXXXXXXXXXXXXXXXNAAVVLQKLWRKTLARMLASRLRREREERERCLRATNIQRRYRGVLGRGKARRRAVEVAKRRKREEAAARMFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSIQKFVRASRCRRILERKRRERAHRHTSATVIQRHYRGVVARVHYVVLCEKRQARSEKGAALRLQCWQRLITSKKLLGLLAVKKKMQEVRERNAAKVIQQSFRRYKIRVEAQARKKSHEDNVRAMSRLEDWAATRIQV 519
            G AVTDAAV +FARGCR LRRLCLRGVVGVPPPLGAPGI+AVC  CR+LELLDL EV  LEDSALVGFHDHQMEKLEKVVLMDCP ITGAGVQWLVAGCPALS+LN+KGTKATLTALNIIKERYPYSRIK         VGDKFFGL+PLPKMRERIAIK+YASLH GA+K+QGCFR    TMKAR+EV+ARR R +E KAARMV R LR                 XX   +VLQKLWRK +ARM ASRLRRE  ER                                RKRE AA+RM Q XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     FVR SRCR++LE+KRRERAHRH S T IQRHYRGV+ARVHYV+LCEKRQ   EKGAALRLQCWQRLITSK L G+LA+ K++++VRE+N AK IQQ +RRY++RVEA+ARKK+HED VRAMSRLEDWAAT+IQV
Sbjct:  430 GSAVTDAAVASFARGCRRLRRLCLRGVVGVPPPLGAPGILAVCSLCRDLELLDLREVLSLEDSALVGFHDHQMEKLEKVVLMDCPKITGAGVQWLVAGCPALSSLNLKGTKATLTALNIIKERYPYSRIK---------VGDKFFGLSPLPKMRERIAIKEYASLHMGARKIQGCFR----TMKARKEVRARRVRAQEEKAARMVTRALRRKQGKAKLQALRLLKNRXXXXXIVLQKLWRKAIARMCASRLRRE--ERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKREVAASRMIQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVRVSRCRKLLEQKRRERAHRHASTTTIQRHYRGVIARVHYVILCEKRQVEREKGAALRLQCWQRLITSKALCGVLAMNKQLRQVREQNGAKTIQQYYRRYRVRVEAEARKKNHEDEVRAMSRLEDWAATQIQV 919
[Close]
BLAST of mRNA_L-elsbetiae_contig8100.17097.1 vs. uniprot
Match: A0A7S1U2X0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2X0_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.660e-15
Identity = 84/263 (31.94%), Postives = 129/263 (49.05%), Query Frame = 0 
Query:   52 GIMAVCCHCRELELLDLGEVWGLEDSALVGFHDHQMEK-LEKVVLMDCPNITGAGVQWLVAGCPALSALNVKGTKATLTALNIIKERYPYSRIKARNTGLSDGVGDKFFGLAPLPKMRERIAIKKYASLHEGAKKLQGCFRQGAETMKARQEVQARRYRLREGKAARMVVRLLRXXXXXXXXXXXXXXXXXXXNAAVVLQKLWRKTLARMLASRLRREREERERC-LRATNIQRRYRGVLGRGKARRRAVEVAKRRKREEAAA 312
            G+  +   C +L+ L+L    GL D A++   + Q    L  + L +C NI+ AG+ W+  G  +L  L+++GT+ T TAL +I +RY YS +  RN          FFGL PL +  +R  I +Y ++ +   K+Q  +R      KAR++ + RR +      AR       XXXXX                A +LQ  WR  LA+ L   +  E +   RC + A  +QR +RGVLGR KA  R  E  +R + ++ A+
Sbjct:  544 GVAYLVAGCPQLDKLNLSGCVGLNDEAMLHLGESQFYPGLRHLHLTNCTNISDAGLSWMSDGVDSLYTLSLRGTRCTYTALRVIADRYRYSHM-VRNAN--------FFGLYPLRRALDRKMINEYGAMIKATIKIQSLYR----ARKAREKAEMRRRKHYMEWTARKXXXXXXXXXXXKYVELVREYKRFQGRMATLLQNWWRCQLAQKLLK-IMLEADYIRRCGVAAVEVQRVWRGVLGRKKATMRRKETMRRLRLQKRAS 792
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8100.17097.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPS0_ECTSI9.410e-16772.48Hypothetical leucine rich repeat calmodulin bindin... [more]
A0A7S1U2X0_9STRA1.660e-1531.94Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 321..341
NoneNo IPR availableGENE3D1.20.5.190coord: 377..425
e-value: 3.5E-6
score: 28.7
NoneNo IPR availablePANTHERPTHR13318UNCHARACTERIZEDcoord: 11..136
NoneNo IPR availablePANTHERPTHR13318:SF50F-BOX/LRR-REPEAT PROTEIN 7coord: 11..136
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..519
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.61
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 25..137
IPR000048IQ motif, EF-hand binding siteSMARTSM00015iq_5coord: 341..363
e-value: 39.0
score: 8.8
coord: 241..263
e-value: 26.0
score: 10.3
coord: 375..397
e-value: 0.83
score: 18.7
coord: 307..329
e-value: 430.0
score: 0.2
coord: 471..493
e-value: 2.1
score: 17.4
coord: 273..295
e-value: 130.0
score: 4.5
coord: 405..427
e-value: 0.028
score: 23.6
IPR000048IQ motif, EF-hand binding sitePFAMPF00612IQcoord: 244..259
e-value: 0.066
score: 13.0
coord: 377..394
e-value: 0.25
score: 11.2
coord: 409..426
e-value: 3.2E-4
score: 20.2
IPR000048IQ motif, EF-hand binding sitePROSITEPS50096IQcoord: 472..501
score: 7.218
IPR000048IQ motif, EF-hand binding sitePROSITEPS50096IQcoord: 242..271
score: 7.199
IPR000048IQ motif, EF-hand binding sitePROSITEPS50096IQcoord: 342..370
score: 7.163
IPR000048IQ motif, EF-hand binding sitePROSITEPS50096IQcoord: 406..435
score: 7.291
IPR000048IQ motif, EF-hand binding sitePROSITEPS50096IQcoord: 278..303
score: 6.687
IPR000048IQ motif, EF-hand binding sitePROSITEPS50096IQcoord: 376..405
score: 7.236
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 2..152
e-value: 2.3E-16
score: 61.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8100contigL-elsbetiae_contig8100:1508..8489 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8100.17097.1mRNA_L-elsbetiae_contig8100.17097.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig8100 1508..8489 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig8100.17097.1 ID=prot_L-elsbetiae_contig8100.17097.1|Name=mRNA_L-elsbetiae_contig8100.17097.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=519bp
PRLLVLLLPVVASCGGAVTDAAVTAFARGCRGLRRLCLRGVVGVPPPLGA
PGIMAVCCHCRELELLDLGEVWGLEDSALVGFHDHQMEKLEKVVLMDCPN
ITGAGVQWLVAGCPALSALNVKGTKATLTALNIIKERYPYSRIKARNTGL
SDGVGDKFFGLAPLPKMRERIAIKKYASLHEGAKKLQGCFRQGAETMKAR
QEVQARRYRLREGKAARMVVRLLRRKQGRAKLQALRLLKNREANAAVVLQ
KLWRKTLARMLASRLRREREERERCLRATNIQRRYRGVLGRGKARRRAVE
VAKRRKREEAAARMFQQRFRIYRAKVKCARLREQAERLRRKRDGGARVLQ
GRWRSYCARQKLEKMKRSLRLEKAKRHAAATSIQKFVRASRCRRILERKR
RERAHRHTSATVIQRHYRGVVARVHYVVLCEKRQARSEKGAALRLQCWQR
LITSKKLLGLLAVKKKMQEVRERNAAKVIQQSFRRYKIRVEAQARKKSHE
DNVRAMSRLEDWAATRIQV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000048IQ_motif_EF-hand-BS
IPR032675LRR_dom_sf