prot_L-elsbetiae_contig809.17083.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig809.17083.1
Unique Nameprot_L-elsbetiae_contig809.17083.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length533
Homology
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BLAST of mRNA_L-elsbetiae_contig809.17083.1 vs. uniprot
Match: D8LDF9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDF9_ECTSI)

HSP 1 Score: 253 bits (645), Expect = 5.650e-74
Identity = 165/305 (54.10%), Postives = 194/305 (63.61%), Query Frame = 0 
Query:  228 GGGVGARPPSPQVGCARPRDGSQCRLSRPVTPGSSDDGAEDDALREVREGPVRDALAALLTSTVMAEDGGRVPAPSFSSVSALRELKYCGPMELLQASALKRVLFARPGVLVRLSLPGKRIGDGGAAAIAPAIAGIRSVDLRSNNIGDDGTVAIASALREAAAAXXXXXXXXXXXXXXXXXXXXXXXXREKSLCILENLSLAGNRIGDSGAAALGRLLEGKDEEGVEERKCSTSGHGREEERGGTSSAQSPERMRYLGWLSVAANPAISIGGKERLLRAGSNRRRLRASGRGGDENDPPPMVIVV 532
            GG  GAR PS       P DG   RL RP  P     GAE+  LR VREGP+RDALAALLTSTVM EDGGRV APSF S+SAL ELKY  P+   QASA++R + ARPGVL+RLSL GKRIGD GA A+APA+A IRSVDLRSNNIGD GT  IASALREAAA                          + SLC+LE+LSLAGNRI D+GAAAL  +LE ++E    +++  T+ H R     G +   +PE    L WLSVA NP IS   +ERLL+AG NR+ +R   R G EN  P MV++V
Sbjct:  242 GGDAGARGPSE----LHPADGDNKRLLRPSKP-----GAEEALLRGVREGPLRDALAALLTSTVMGEDGGRVLAPSFPSISALCELKYSEPIGPPQASAVERAILARPGVLLRLSLAGKRIGDRGAMALAPALAAIRSVDLRSNNIGDVGTTTIASALREAAATVRLGGPAAGANQT------------KSSLCVLESLSLAGNRIEDAGAAALSDMLEVQNEN---DKESITNRHPR-----GRNVTSAPELFPSLAWLSVAGNPGISGDARERLLQAGVNRQEMRR--RRGSENQQPSMVVIV 515
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BLAST of mRNA_L-elsbetiae_contig809.17083.1 vs. uniprot
Match: A0A6H5JCJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCJ5_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 7.300e-57
Identity = 157/370 (42.43%), Postives = 190/370 (51.35%), Query Frame = 0 
Query:  224 DRGSGGGVGARPPSPQVGCARPR--DGSQCRLSRPVTPGSSDDGAEDDALREVREGPVRDALAALLTSTVMAEDGGRVPAPSFSSVSALRELKYCGPMELLQASALKRVLFAR-----------------------------------------------------------PGVLVRLSLPGKRIGDGGAAAIAPAIAGIRSVDLRSNNIGDDGTVAIASALREAAAAXXXXXXXXXXXXXXXXXXXXXXXXREKSLCILENLSLAGNRIGDSGAAALGRLLEGKDEEGVEERKCSTSGHGREEERGGTSSAQSPERMRYLGWLSVAANPAISIGGKERLLRAGSNRRRLRASGRGGDENDPPPMVIVV 532
            D   GG  GAR      G ++P   DG   R  RP  PG      E+  LR VREGP+RDALAALLTSTVM EDGGRV APSF S+SA+ ELKY  P+   QASA++RV+ AR                                                           PGVL+RLSL GKRIGD GA A+APA+A +RSVDLRSNNIGD GT AIASALREAA                           +   CILE LSLAGNRI D+GAAAL  +LE +DE    +++ + + H       G ++  +PE    L WLSVA NP IS   +ERLL+AG +R+ +R     G EN  P MV++ 
Sbjct:  237 DAAMGGDAGAR------GHSKPHSADGDNKRFLRPSKPG------EEALLRGVREGPLRDALAALLTSTVMGEDGGRVLAPSFPSISAMCELKYSEPIGPRQASAVERVILARSVILSLVVSINLANRLANDKTSVRCTVFHAGLAFSFGFPFVSFHCFSVLCMPRYGFPFRPGVLLRLSLAGKRIGDRGAMALAPALAAVRSVDLRSNNIGDVGTTAIASALREAAVTVRLGGAAAGANHT------------KNRSCILETLSLAGNRIEDAGAAALSDMLEAQDEN---DKESTINRHS-----WGRNATSAPELFPPLVWLSVAGNPGISGDARERLLQAGVHRQEMRRH--SGSENQQPSMVVIA 572
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig809.17083.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDF9_ECTSI5.650e-7454.10Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JCJ5_9PHAE7.300e-5742.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 420..447
e-value: 0.096
score: 21.8
coord: 363..387
e-value: 10.0
score: 10.0
coord: 335..362
e-value: 32.0
score: 6.5
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 311..387
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 423..441
e-value: 0.021
score: 14.8
coord: 363..382
e-value: 0.012
score: 15.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig809contigL-elsbetiae_contig809:19218..22405 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig809.17083.1mRNA_L-elsbetiae_contig809.17083.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig809 18993..22464 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig809.17083.1 ID=prot_L-elsbetiae_contig809.17083.1|Name=mRNA_L-elsbetiae_contig809.17083.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=533bp
MWGGSGKASTSPARFDRSSRMSTMRTTHILAAGKSLQRSTPEGRLQRKMA
ARSAARTQQAQRLPAPTTTRPALTASPRSPLRPAPLIVTRQNAHPAASGG
GSIAAAPVGGSTAANGGSSSSSCAVSRQESSAGKTQGGAAAVDHGGASEA
ATNSRADGGRVGATIFQGSSAGATVGSGLAETRRSRTPPPTTAFEVPAEL
AAQPPGKASDVPDATSRGKGKSGDRGSGGGVGARPPSPQVGCARPRDGSQ
CRLSRPVTPGSSDDGAEDDALREVREGPVRDALAALLTSTVMAEDGGRVP
APSFSSVSALRELKYCGPMELLQASALKRVLFARPGVLVRLSLPGKRIGD
GGAAAIAPAIAGIRSVDLRSNNIGDDGTVAIASALREAAAAAALAATAAT
ATTRAAGSRGGERGEREKSLCILENLSLAGNRIGDSGAAALGRLLEGKDE
EGVEERKCSTSGHGREEERGGTSSAQSPERMRYLGWLSVAANPAISIGGK
ERLLRAGSNRRRLRASGRGGDENDPPPMVIVV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt