prot_L-elsbetiae_contig799.16962.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig799.16962.1
Unique Nameprot_L-elsbetiae_contig799.16962.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length293
Homology
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BLAST of mRNA_L-elsbetiae_contig799.16962.1 vs. uniprot
Match: D7G2F0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F0_ECTSI)

HSP 1 Score: 226 bits (575), Expect = 1.120e-68
Identity = 122/258 (47.29%), Postives = 153/258 (59.30%), Query Frame = 0 
Query:   18 QVSGLHLRECVQWLTETLGLRQEEIAELVLG-----------CPPLLFKSINFQLKPNLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDREGVASMLLRYPQLFNFSLENMAWKARWLNQEMLMDRHQVKRVLGRSPSIFAYSAERNLVPTLEFFLDDLGATKAQVREAVIEKPRLLGMSLENRLVPRLQEIRKAGFTPSWELHHEVMLFASDIVFRRWLKEEPMGSARRREKVQGGILQT 264
            +VSG  + +CVQWLTET+G+ ++++A+LVL            CP LL KS+     P +                                               R+G+  ML+RYPQLFNFSL+NMAWKARWL +E+L+D  +VK+V  R PS+ AYSAERNLVPTLEFFLD+LGAT+ QVREAV                 RLQ IR+AGFTPSWELHH VMLFASD+VF RWL+EEP G+A+RR ++QGG  QT
Sbjct:  122 EVSGYKVGQCVQWLTETVGMTKDQVAKLVLAHPPMARKVVCSCPQLLVKSVPSNFMPKIIFFERRLG-------------------------------------IGRDGIGPMLVRYPQLFNFSLKNMAWKARWLEEELLLDHIEVKKVFVRCPSVLAYSAERNLVPTLEFFLDELGATRQQVREAVXXXXXXXXXXXXXXXXXRLQIIRQAGFTPSWELHHRVMLFASDVVFGRWLREEPTGAAQRRRELQGGRSQT 342
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BLAST of mRNA_L-elsbetiae_contig799.16962.1 vs. uniprot
Match: UPI0009017464 (transcription termination factor MTEF1, chloroplastic-like n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI0009017464)

HSP 1 Score: 59.3 bits (142), Expect = 6.350e-7
Identity = 37/119 (31.09%), Postives = 63/119 (52.94%), Query Frame = 0 
Query:  137 KARWLNQEMLMDRHQVKRVLGRSPSIFAYSAERNLVPTLEFFLDDLGATKAQVREAVIEKPRLLGMSLENRLVPRLQEIRKAG-FTPSWELHHEVMLFASDIVFRRWLKEEPMGSARRR 254
            K  +L + +   R +V +++ RSP++  YS + NLVP +EFF++++     +++      P+    SLE ++ PR + +++ G F P  E     ML  SD  F  WL E  + S  RR
Sbjct:   89 KIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPKVEFFMEEMRGDVKELKRF----PQYFSFSLERKIKPRHRLLKEHGIFMPLSE-----MLKVSDGQFNNWLLELRLRSVERR 198
[Close]
BLAST of mRNA_L-elsbetiae_contig799.16962.1 vs. uniprot
Match: A0A8J5XBV3_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XBV3_DIALT)

HSP 1 Score: 59.7 bits (143), Expect = 1.850e-6
Identity = 36/101 (35.64%), Postives = 60/101 (59.41%), Query Frame = 0 
Query:  114 EGVASMLLRYPQLFNFSLE-NMAWKARWLNQEMLMDRHQVKRVLGRSPSIFAYSAERNLVPTLEFFLDDLGATKAQVREAVIEKPRLLGMSLENRLVPRLQ 213
            E +  M+L +P +  +S E  +A   R+L + + ++  ++  +L   P + +Y A  NL   L FF +++GA+  QVR AV+  P +LG+S+ NRL PRLQ
Sbjct:  267 EQLRKMVLLFPSVACYSPEAKLAPTVRFLRERLSLNSDEMAAMLRVKPQLVSY-ALANLQAKLAFFEEEVGASPEQVRTAVLAAPAILGLSIANRLRPRLQ 366
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig799.16962.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G2F0_ECTSI1.120e-6847.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI00090174646.350e-731.09transcription termination factor MTEF1, chloroplas... [more]
A0A8J5XBV3_DIALT1.850e-635.64Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 190..221
e-value: 0.025
score: 23.8
coord: 80..112
e-value: 16.0
score: 14.4
coord: 43..75
e-value: 2.1
score: 17.4
coord: 117..148
e-value: 130.0
score: 10.8
coord: 153..185
e-value: 0.0056
score: 25.9
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 71..191
e-value: 4.8E-14
score: 52.0
coord: 149..224
e-value: 1.3E-8
score: 34.2
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10coord: 13..151
e-value: 9.3E-23
score: 82.7
NoneNo IPR availablePANTHERPTHR13068:SF78MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEINcoord: 137..242
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 15..168
NoneNo IPR availablePANTHERPTHR13068:SF78MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEINcoord: 15..168
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 137..242
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..292
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.762

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig799contigL-elsbetiae_contig799:25410..31137 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig799.16962.1mRNA_L-elsbetiae_contig799.16962.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig799 24990..32192 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig799.16962.1 ID=prot_L-elsbetiae_contig799.16962.1|Name=mRNA_L-elsbetiae_contig799.16962.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=293bp
MFPLGCLGAWLVQLLTGQVSGLHLRECVQWLTETLGLRQEEIAELVLGCP
PLLFKSINFQLKPNLNWLENDLGLTRAEARRAVCSCPHLLAKCVSSNVLP
RVKFFYEVLGFDREGVASMLLRYPQLFNFSLENMAWKARWLNQEMLMDRH
QVKRVLGRSPSIFAYSAERNLVPTLEFFLDDLGATKAQVREAVIEKPRLL
GMSLENRLVPRLQEIRKAGFTPSWELHHEVMLFASDIVFRRWLKEEPMGS
ARRREKVQGGILQTSVAKVAKARSELAQTKPPREGPRRAPPA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf