prot_L-elsbetiae_contig7979.16948.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig7979.16948.1
Unique Name	prot_L-elsbetiae_contig7979.16948.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	123

Homology

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BLAST of mRNA_L-elsbetiae_contig7979.16948.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI)

HSP 1 Score: 222 bits (566), Expect = 3.530e-73
Identity = 117/122 (95.90%), Postives = 121/122 (99.18%), Query Frame = 0

Query:    1 MSGKGKGGRGKKSTSRSSKAGLQFPVGRVGRFLKQGKYATRTGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122
            MSGKGKGGRGKKST+RS+KAGLQFPVGRVGRFLK+GKYA+R GAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK
Sbjct:    1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122

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BLAST of mRNA_L-elsbetiae_contig7979.16948.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI)

HSP 1 Score: 220 bits (561), Expect = 1.220e-71
Identity = 116/121 (95.87%), Postives = 120/121 (99.17%), Query Frame = 0

Query:    1 MSGKGKGGRGKKSTSRSSKAGLQFPVGRVGRFLKQGKYATRTGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 121
            MSGKGKGGRGKKST+RS+KAGLQFPVGRVGRFLK+GKYA+R GAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK
Sbjct:   46 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 166

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BLAST of mRNA_L-elsbetiae_contig7979.16948.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 8.630e-70
Identity = 112/119 (94.12%), Postives = 117/119 (98.32%), Query Frame = 0

Query:    1 MSGKGKGGRGKKSTSRSSKAGLQFPVGRVGRFLKQGKYATRTGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKT 119
            MSGKGKGGRGKKSTS+SSKAGLQFPV R+GR+LK+GKYATR GAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK+
Sbjct:    1 MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKS 119

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BLAST of mRNA_L-elsbetiae_contig7979.16948.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 4.470e-69
Identity = 112/119 (94.12%), Postives = 117/119 (98.32%), Query Frame = 0

Query:    1 MSGKGKGGRGKKSTSRSSKAGLQFPVGRVGRFLKQGKYATRTGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKT 119
            MSGKGKGGRGKKSTS+SSKAGLQFPV R+GR+LK+GKYATR GAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK+
Sbjct:   52 MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKS 170

[Close]

BLAST of mRNA_L-elsbetiae_contig7979.16948.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 5.730e-67
Identity = 105/118 (88.98%), Postives = 114/118 (96.61%), Query Frame = 0

Query:    1 MSGKGKGGRGKKSTSRSSKAGLQFPVGRVGRFLKQGKYATRTGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 118
            MSGKGKGGRGKK TSRS+KAGLQFPVGR+GRF+KQGKY++R G GAPVY+AAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPKK
Sbjct:    1 MSGKGKGGRGKKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118

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BLAST of mRNA_L-elsbetiae_contig7979.16948.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA)

HSP 1 Score: 200 bits (508), Expect = 2.470e-64
Identity = 105/122 (86.07%), Postives = 115/122 (94.26%), Query Frame = 0

Query:    1 MSGKGKGGRG-KKSTSRSSKAGLQFPVGRVGRFLKQGKYATRTGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 121
            MSGKGKGGRG KKST+ S+KAGLQFPVGR+GR+L+QGKYATR GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKK+ K
Sbjct:    1 MSGKGKGGRGGKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122

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BLAST of mRNA_L-elsbetiae_contig7979.16948.1 vs. uniprot
Match: A0A836CG77_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG77_9STRA)

HSP 1 Score: 199 bits (505), Expect = 8.880e-64
Identity = 106/122 (86.89%), Postives = 113/122 (92.62%), Query Frame = 0

Query:    1 MSGKGKGGRG---KKSTSRSSKAGLQFPVGRVGRFLKQGKYATRTGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKT 119
            M+GKGKGGRG   KKSTS+SSKAGLQFPV R+GRFLK G+YA R GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKKT
Sbjct:    1 MAGKGKGGRGAEAKKSTSKSSKAGLQFPVARLGRFLKVGRYAERVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKKT 122

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BLAST of mRNA_L-elsbetiae_contig7979.16948.1 vs. uniprot
Match: A0A448ZH28_9STRA (Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZH28_9STRA)

HSP 1 Score: 198 bits (504), Expect = 1.000e-63
Identity = 104/122 (85.25%), Postives = 115/122 (94.26%), Query Frame = 0

Query:    1 MSGKGKGGRG-KKSTSRSSKAGLQFPVGRVGRFLKQGKYATRTGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 121
            MSGKGKGGRG KKST+ S+KAGLQFPVGR+GR+L+QGKYATR GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRHI LAV+NDEELNKLLG VTIASGGVLPNIHA+LLPKK+ K
Sbjct:    1 MSGKGKGGRGEKKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAILLPKKSGK 122

[Close]

BLAST of mRNA_L-elsbetiae_contig7979.16948.1 vs. uniprot
Match: A0A6H5KGY1_9PHAE (Integrase catalytic domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGY1_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 1.550e-63
Identity = 115/120 (95.83%), Postives = 119/120 (99.17%), Query Frame = 0

Query:    1 MSGKGKGGRGKKSTSRSSKAGLQFPVGRVGRFLKQGKYATRTGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTV 120
            MSGKGKGGRGKKST+RS+KAGLQFPVGRVGRFLK+GKYA+R GAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTV
Sbjct:    1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTV 120

[Close]

BLAST of mRNA_L-elsbetiae_contig7979.16948.1 vs. uniprot
Match: A0A7S2GRL8_9STRA (Histone H2A n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GRL8_9STRA)

HSP 1 Score: 197 bits (502), Expect = 2.990e-63
Identity = 102/118 (86.44%), Postives = 111/118 (94.07%), Query Frame = 0

Query:    1 MSGKGKGGRGKKSTSRSSKAGLQFPVGRVGRFLKQGKYATRTGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 118
            MSGKGKGGRGKKST+ S+KAGLQFPVGR+GR+LKQGK+ATR GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI PRHI LAV+NDEELNKLLG VTIA GGVLPNIH+VLLPKK
Sbjct:    1 MSGKGKGGRGKKSTTSSAKAGLQFPVGRIGRYLKQGKFATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIAPRHITLAVKNDEELNKLLGGVTIAGGGVLPNIHSVLLPKK 118

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig7979.16948.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig7979.16948.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FWI9_ECTSI	3.530e-73	95.90	Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7...	[more]
D7G193_ECTSI	1.220e-71	95.87	Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2...	[more]
A0A6H5KG79_9PHAE	8.630e-70	94.12	Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta...	[more]
D7FVQ5_ECTSI	4.470e-69	94.12	Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2...	[more]
D8LLP0_ECTSI	5.730e-67	88.98	Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8...	[more]
A0A6U2JFS4_9STRA	2.470e-64	86.07	Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 Rep...	[more]
A0A836CG77_9STRA	8.880e-64	86.89	Histone H2A n=2 Tax=Tribonema minus TaxID=303371 R...	[more]
A0A448ZH28_9STRA	1.000e-63	85.25	Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 Re...	[more]
A0A6H5KGY1_9PHAE	1.550e-63	95.83	Integrase catalytic domain-containing protein n=7 ...	[more]
A0A7S2GRL8_9STRA	2.990e-63	86.44	Histone H2A n=1 Tax=Helicotheca tamesis TaxID=3740...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 56..69 score: 90.54 coord: 12..34 score: 71.59 coord: 41..56 score: 85.83 coord: 98..116 score: 76.04 coord: 70..84 score: 77.52
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 3..121 e-value: 5.5E-78 score: 275.1
IPR009072	Histone-fold	GENE3D	1.10.20.10		coord: 1..122 e-value: 1.7E-61 score: 207.8
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 2..121
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 11..87 e-value: 2.8E-15 score: 56.8
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 90..122 e-value: 1.7E-19 score: 69.2
None	No IPR available	PANTHER	PTHR23430:SF72	HISTONE H2A TYPE 2-B	coord: 1..120
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 1..120
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 20..26

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig7979	contig	L-elsbetiae_contig7979:499..867 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig7979.16948.1	mRNA_L-elsbetiae_contig7979.16948.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig7979 499..867 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig7979.16948.1 ID=prot_L-elsbetiae_contig7979.16948.1|Name=mRNA_L-elsbetiae_contig7979.16948.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp
MSGKGKGGRGKKSTSRSSKAGLQFPVGRVGRFLKQGKYATRTGAGAPVYL
AAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVT
IASGGVLPNIHAVLLPKKTVKK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002119	Histone_H2A
IPR009072	Histone-fold
IPR007125	Histone_H2A/H2B/H3
IPR032454	Histone_H2A_C
IPR032458	Histone_H2A_CS