prot_L-elsbetiae_contig7874.16828.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig7874.16828.1
Unique Nameprot_L-elsbetiae_contig7874.16828.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length606
Homology
BLAST of mRNA_L-elsbetiae_contig7874.16828.1 vs. uniprot
Match: D7FUG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUG5_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 1.290e-34
Identity = 62/101 (61.39%), Postives = 76/101 (75.25%), Query Frame = 0
Query:  505 ISTKFNKTTPETCNALVAKLKGAVKQDEEGTWVHRIKLIEVCNADDDIVRYLLGSNTQDSYRRVTNKFKILANFSSWPGSKSQLFTHAEDFDYSRYFILRE 605
            +STK NKTT ETC+A V KL     +D+EG WVHR KLI++C  D D+  YLLG N Q S RRV  KFK+LA+F+SWPGS+ QL++H ED +YSRYFILRE
Sbjct:    1 MSTKLNKTTKETCDASVEKLMAVAHKDDEGVWVHRTKLIDLCCTDGDLTNYLLGPNAQCSPRRVAKKFKVLADFTSWPGSRCQLYSHTEDLEYSRYFILRE 101          
BLAST of mRNA_L-elsbetiae_contig7874.16828.1 vs. uniprot
Match: D8LKX6_ECTSI (Similar to ubiquitin specific protease 48 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKX6_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 4.090e-29
Identity = 67/123 (54.47%), Postives = 78/123 (63.41%), Query Frame = 0
Query:  184 ERGPVEKCVHPSLKKKGSV--NQKRGNQQWCPICLDDNRVPGTLRMGSGSERCPGCGLHAHADCRTEIPPA---------------GRWPCDECQRRRDRVIP--GNNPVWLRLKAARLDGGF 287
            E GP +  +H SL+ KG    +Q RGNQ WCP CL DNR+PG   MGS S+RCPGCGLH HA CR + P A               G W CDEC+RR D V+   G++PVWLRLKAARLDGGF
Sbjct:  525 EHGPDDTHLHESLRGKGGAAPSQPRGNQPWCPNCLGDNRLPGEKTMGSDSKRCPGCGLHTHARCRRKRPEASPGAAGATGGXXAADGSWACDECKRREDGVVVAGGDDPVWLRLKAARLDGGF 647          
BLAST of mRNA_L-elsbetiae_contig7874.16828.1 vs. uniprot
Match: D7FUF2_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF2_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 2.640e-28
Identity = 60/106 (56.60%), Postives = 70/106 (66.04%), Query Frame = 0
Query:  130 RPCEACRRPLDTNRRPSFCCRTCDKLFHSVCAGYDPRKRQSPPPDWICPHCPNGERGPVEKCVHPSLKKKGSVNQKRGNQQWCPICLDDNRVP-----GTLRMGSG 230
            R CEAC +    +  PSF CR C KL+H  C GY  R RQSPPPDWICPHCP GERGP  + VH S+  KG+V Q++GN  WCPICL D+R+P     G L  GSG
Sbjct:  120 RGCEACGKVFTRDVHPSFACRACRKLYHRSCVGYANRARQSPPPDWICPHCPGGERGPSPQ-VHLSVAGKGTVKQRKGNMPWCPICLRDDRLPNSKLVGRLNSGSG 224          
BLAST of mRNA_L-elsbetiae_contig7874.16828.1 vs. uniprot
Match: A0A6H5L6A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6A7_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.850e-8
Identity = 37/80 (46.25%), Postives = 41/80 (51.25%), Query Frame = 0
Query:  227 MGSGSERCPGCGLHAHADCRTEIPPA-----------------GRWPCDECQRRRD--RVIPGNNPVWLRLKAARLDGGF 287
            MGS S+RCPGCGLH                             G W CDEC+RR D   V   ++PVWLRLKAARLDGGF
Sbjct:    1 MGSDSKRCPGCGLHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSWACDECKRREDGVAVASADDPVWLRLKAARLDGGF 80          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7874.16828.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FUG5_ECTSI1.290e-3461.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LKX6_ECTSI4.090e-2954.47Similar to ubiquitin specific protease 48 n=1 Tax=... [more]
D7FUF2_ECTSI2.640e-2856.60PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L6A7_9PHAE3.850e-846.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 604..605
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 131..181
e-value: 6.7E-5
score: 32.3
coord: 211..261
e-value: 17.0
score: 3.5
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 95..186
e-value: 5.8E-8
score: 34.6
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 132..181
e-value: 2.0E-7
score: 30.8
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 129..183
score: 9.036
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 132..180
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 207..266
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 123..192

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7874contigL-elsbetiae_contig7874:564..4518 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7874.16828.1mRNA_L-elsbetiae_contig7874.16828.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig7874 298..4858 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig7874.16828.1 ID=prot_L-elsbetiae_contig7874.16828.1|Name=mRNA_L-elsbetiae_contig7874.16828.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=606bp
MYAVDPDDLLLSLVPKDSKGIMFVAVRTGGGSDTCSTDAAAGAAARAAAE
ARAAVAATPQYGTTRQLKLKSSGTHARHGTMTRTARRPKLPSPAAPTTMV
DNRKKSATAKSSGGNCSSTSRSTGSSISIRPCEACRRPLDTNRRPSFCCR
TCDKLFHSVCAGYDPRKRQSPPPDWICPHCPNGERGPVEKCVHPSLKKKG
SVNQKRGNQQWCPICLDDNRVPGTLRMGSGSERCPGCGLHAHADCRTEIP
PAGRWPCDECQRRRDRVIPGNNPVWLRLKAARLDGGFSYVQSSGAYVHPA
AVAVVGSPSSSERAFSGAAATPLAVTPPAVTSPAATSPANCLNQPSFSSM
GSAAWSSDAKEAALATAAVAAAAASFRPPQQCSPAFRPPLPSVAASSTAV
PSSPPPPPPPPPPTESLSTGGSSSLVASTPATPAAPPTVKTEEEEDSKPR
RYPKRARVTTSDHSQPPSQPQFRQESDWQTAENAVLAPIMLYGPPEQQHV
ARAFISTKFNKTTPETCNALVAKLKGAVKQDEEGTWVHRIKLIEVCNADD
DIVRYLLGSNTQDSYRRVTNKFKILANFSSWPGSKSQLFTHAEDFDYSRY
FILRE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR019786Zinc_finger_PHD-type_CS
IPR011011Znf_FYVE_PHD