prot_L-elsbetiae_contig7764.16707.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig7764.16707.1
Unique Nameprot_L-elsbetiae_contig7764.16707.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length355
Homology
BLAST of mRNA_L-elsbetiae_contig7764.16707.1 vs. uniprot
Match: A0A6H5JL72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL72_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 1.430e-37
Identity = 121/242 (50.00%), Postives = 137/242 (56.61%), Query Frame = 0
Query:    1 VQAFDDALNTHTRKPVDAVEARKWDKHAAQEVAAQPSTAGSSRVPPYLAPAATARGGTTAGSTNAPARVSSASXAAAAAARHQEQGQSPS----QGFQAADRRFASLLAKGSEEASRGGGEEARALPAGIPGPWEPVAGPSEGHPYSREVP-QDGRGQRFEYARPGPSEVYPRGDEYSSGAHPYS--SRAGPQYPPPPQYPGRAAAN-FEEGGLGRHGLPPXXXXXHPGMGPHAAAFQSLDG 234
            ++AFDDALN+H+RKPVD VEARKW+KHAAQ VA QP TA      P                           X + A A +Q     PS    QGFQ ADRRFASLLAKG+ + S GGG  A  + AGIPGPWEPVAGP+EG  Y R    QD  GQR EYARP   +   + +EY   AH YS  SRA P +P             FEEGG G   L  XXXXXHPG+GPHAAAFQS  G
Sbjct:   39 LKAFDDALNSHSRKPVDGVEARKWNKHAAQGVAVQPHTAEGR---PQQXXXXXXXXXXXXXXXXXXXXXXXXXXTSPAGAGYQRPRSVPSGHRDQGFQEADRRFASLLAKGNVKTSSGGGT-AGVVRAGIPGPWEPVAGPTEGQQYGRAAGHQDDLGQRTEYARPEAYDPNAQQEEYGGEAHNYSYPSRAAPHHPQXXXXXXXXXXXXFEEGGRG-FPLXXXXXXXHPGVGPHAAAFQSFFG 275          
BLAST of mRNA_L-elsbetiae_contig7764.16707.1 vs. uniprot
Match: D8LRK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRK9_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 4.830e-31
Identity = 111/234 (47.44%), Postives = 125/234 (53.42%), Query Frame = 0
Query:    1 VQAFDDALNTHTRKPVDAVEARKWDKHAAQEVAAQPSTA-GSSRVPPYLAPAATARGGTTAGSTNAPARVSSASXAAAAAARHQEQGQSPSQGFQAADRRFASLLAKGSEEASRGGGEEARALPAGIPGPWEPVAGPSEGHPYSREVP-QDGRGQRFEYARPGPSEVYPRGDEYSSGAHPYSSRAGPQYPPPPQYPGRAAANF--EEGGLGRHGLPPXXXXXHPGMGPHAAAFQ 230
            ++AFDDALN+H+RKPVD VEARKW+KHAAQ VA QP TA G  +                          +S + A     R    G    QGFQ ADRRFASLLAKG+ EAS GGG  A  + AGIPGPWEPVAGP+EG  Y R    QD  GQR EYARPG  +   R +EY                               EEGG G   L  XXXXXHPG+GPHAAAFQ
Sbjct:   22 LKAFDDALNSHSRKPVDGVEARKWNKHAAQGVAVQPHTAEGKPQXXXXXXXXXXXXXXXXXXXXXXXXXXTSPAGAGYQRPRSVPSGHRD-QGFQEADRRFASLLAKGNAEASSGGGT-AGVVRAGIPGPWEPVAGPTEGQQYGRAAGHQDDPGQRTEYARPGAYDPNARQEEYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEGGRG-FPLXXXXXXXHPGVGPHAAAFQ 252          
BLAST of mRNA_L-elsbetiae_contig7764.16707.1 vs. uniprot
Match: A0A3M6VFG1_9STRA (SMN domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VFG1_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 7.020e-7
Identity = 34/78 (43.59%), Postives = 41/78 (52.56%), Query Frame = 0
Query:  185 PQYPPPPQYPGRAAANFEEGGLGRHGLPPXXXXXHPGMGPHAAAFQSLDGVPDDDLADLLLAWYYSGYYTGRYRAMQE 262
            P +PPPP  P                 P       PG+ P+ A       VPDDDLA++L+AWY SGYYTGR+RAMQE
Sbjct:  132 PYFPPPPPIPSNPTP-----------FPGMPAAQGPGLAPNVA-------VPDDDLANVLMAWYQSGYYTGRFRAMQE 191          
BLAST of mRNA_L-elsbetiae_contig7764.16707.1 vs. uniprot
Match: A0A8K1C8B3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C8B3_PYTOL)

HSP 1 Score: 58.2 bits (139), Expect = 3.040e-6
Identity = 39/84 (46.43%), Postives = 44/84 (52.38%), Query Frame = 0
Query:  190 PPQYPGRAAANFEEGGLGR----HGLPPXXXXXHPGMGPH----AAAFQSLDGV-PDDDLADLLLAWYYSGYYTGRYRAMQEAR 264
            PP Y   A   F+     +    HG P       PGM P     A  F S+ G    DDLA+LLLAWY SGYYTGRY+AMQE R
Sbjct:  128 PPSYQAHAPPQFQPFSHPQQPYYHGAPTPGAPWTPGMQPPSQWAAPPFPSVPGQGSQDDLANLLLAWYQSGYYTGRYQAMQEMR 211          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7764.16707.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JL72_9PHAE1.430e-3750.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRK9_ECTSI4.830e-3147.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A3M6VFG1_9STRA7.020e-743.59SMN domain-containing protein n=1 Tax=Peronospora ... [more]
A0A8K1C8B3_PYTOL3.040e-646.43Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010304Survival motor neuronPFAMPF06003SMNcoord: 182..271
e-value: 9.5E-5
score: 21.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7764contigL-elsbetiae_contig7764:6435..9124 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7764.16707.1mRNA_L-elsbetiae_contig7764.16707.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig7764 5113..9124 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig7764.16707.1 ID=prot_L-elsbetiae_contig7764.16707.1|Name=mRNA_L-elsbetiae_contig7764.16707.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=355bp
VQAFDDALNTHTRKPVDAVEARKWDKHAAQEVAAQPSTAGSSRVPPYLAP
AATARGGTTAGSTNAPARVSSASTAAAAAARHQEQGQSPSQGFQAADRRF
ASLLAKGSEEASRGGGEEARALPAGIPGPWEPVAGPSEGHPYSREVPQDG
RGQRFEYARPGPSEVYPRGDEYSSGAHPYSSRAGPQYPPPPQYPGRAAAN
FEEGGLGRHGLPPPPPPPHPGMGPHAAAFQSLDGVPDDDLADLLLAWYYS
GYYTGRYRAMQEARKPRNYYRRHYPPPPSAGHGNHHEGPPTPSSAYHGGG
GGEGWGGDPSGGWHGQHHPPLPVPAGAPAAPPPSVQSSPAPAPVGRGSFG
RRGP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010304Survival_motor_neuron