prot_L-elsbetiae_contig752.16409.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig752.16409.1
Unique Nameprot_L-elsbetiae_contig752.16409.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length129
Homology
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BLAST of mRNA_L-elsbetiae_contig752.16409.1 vs. uniprot
Match: D8LU48_ECTSI (Ubiquitin UbiA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU48_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 1.250e-78
Identity = 122/128 (95.31%), Postives = 123/128 (96.09%), Query Frame = 0 
Query:    1 MQIFGKTLTGRTITLDVAPSDTVDGVKQTIQDREGIPASQQRLVFADKQLEDGRTLSDYNVEQASTLHVLLSLVGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 128
            MQIFGKTLTGRTITLDVAPSDT+DGVKQTIQD EGIPASQQRLVFA KQLEDGRTLSDYNVEQ STL VLLSL GGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK
Sbjct:    1 MQIFGKTLTGRTITLDVAPSDTIDGVKQTIQDLEGIPASQQRLVFAAKQLEDGRTLSDYNVEQESTLQVLLSLRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 128
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BLAST of mRNA_L-elsbetiae_contig752.16409.1 vs. uniprot
Match: A0A8D0YMU0_PIG (Ubiquitin-60S ribosomal protein L40 n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D0YMU0_PIG)

HSP 1 Score: 219 bits (557), Expect = 1.300e-71
Identity = 112/128 (87.50%), Postives = 117/128 (91.41%), Query Frame = 0 
Query:    1 MQIFGKTLTGRTITLDVAPSDTVDGVKQTIQDREGIPASQQRLVFADKQLEDGRTLSDYNVEQASTLHVLLSLVGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 128
            MQIFGKTLTGRTITLDV  SDT+ GVKQ IQDREGIPA QQRLV   KQLE+GRTL DYNV++ ST+HVLLSL GGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK
Sbjct:    1 MQIFGKTLTGRTITLDVESSDTIVGVKQIIQDREGIPACQQRLVLGAKQLEEGRTLGDYNVQKESTVHVLLSLHGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 128
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BLAST of mRNA_L-elsbetiae_contig752.16409.1 vs. uniprot
Match: A0A7S3H022_9STRA (Hypothetical protein n=5 Tax=Eukaryota TaxID=2759 RepID=A0A7S3H022_9STRA)

HSP 1 Score: 208 bits (529), Expect = 4.340e-67
Identity = 103/128 (80.47%), Postives = 116/128 (90.62%), Query Frame = 0 
Query:    1 MQIFGKTLTGRTITLDVAPSDTVDGVKQTIQDREGIPASQQRLVFADKQLEDGRTLSDYNVEQASTLHVLLSLVGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 128
            MQIF KTLTG+TITL+V PSD++D VKQ IQD+EGIP  QQRL+FA KQLEDGRTLSDYN+++ STLH++L L GGV+DPSLAALAKTFN EKM+CRKCYARLPPRAKNCRKKKCGHTNQLR KKKLK
Sbjct:   19 MQIFVKTLTGKTITLEVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVFDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNQLRIKKKLK 146
[Close]
BLAST of mRNA_L-elsbetiae_contig752.16409.1 vs. uniprot
Match: W7TN89_9STRA (Ubiquitin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN89_9STRA)

HSP 1 Score: 209 bits (532), Expect = 6.810e-67
Identity = 104/128 (81.25%), Postives = 115/128 (89.84%), Query Frame = 0 
Query:    1 MQIFGKTLTGRTITLDVAPSDTVDGVKQTIQDREGIPASQQRLVFADKQLEDGRTLSDYNVEQASTLHVLLSLVGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 128
            MQIF KTLTG+TITLDV PSDT++ VKQ IQD+EGIP  QQRL+FA KQLEDGRTLSDYN+++ STLH++L L GGVYDPSLAALAKTFN EKM+CRKCYARLPPRAKNCRKKKCGHTN LR KKKLK
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 128
[Close]
BLAST of mRNA_L-elsbetiae_contig752.16409.1 vs. uniprot
Match: B7G5H7_PHATC (Ubiquitin extension protein 1/2 n=9 Tax=Bacillariophyta TaxID=2836 RepID=B7G5H7_PHATC)

HSP 1 Score: 202 bits (514), Expect = 4.650e-65
Identity = 101/128 (78.91%), Postives = 112/128 (87.50%), Query Frame = 0 
Query:    1 MQIFGKTLTGRTITLDVAPSDTVDGVKQTIQDREGIPASQQRLVFADKQLEDGRTLSDYNVEQASTLHVLLSLVGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 128
            MQIF KTLTG+TITLDV PSDT+D VK  IQD+EGIP  QQRL+FA KQLEDGRTLSDYN+++ STLH++L L GGVYDPSLA LAK FN +K VCRKCYARLPPRA NCRKKKCGHT+QLRPKKKLK
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLALLAKGFNCDKAVCRKCYARLPPRATNCRKKKCGHTSQLRPKKKLK 128
[Close]
BLAST of mRNA_L-elsbetiae_contig752.16409.1 vs. uniprot
Match: A0A1Z5JFA3_FISSO (Large subunit ribosomal protein L40e n=4 Tax=Stramenopiles TaxID=33634 RepID=A0A1Z5JFA3_FISSO)

HSP 1 Score: 201 bits (512), Expect = 9.380e-65
Identity = 100/128 (78.12%), Postives = 112/128 (87.50%), Query Frame = 0 
Query:    1 MQIFGKTLTGRTITLDVAPSDTVDGVKQTIQDREGIPASQQRLVFADKQLEDGRTLSDYNVEQASTLHVLLSLVGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 128
            MQIF KTLTG+TITLDV PSDT+D VK  IQD+EGIP  QQRL+FA KQLEDGRTLSDYN+++ STLH++L L GGVYDP+LA LAK FN +K VCRKCYARLPPRA NCRKKKCGHT+QLRPKKKLK
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPTLAMLAKKFNCDKAVCRKCYARLPPRATNCRKKKCGHTSQLRPKKKLK 128
[Close]
BLAST of mRNA_L-elsbetiae_contig752.16409.1 vs. uniprot
Match: A0A448YZG3_9STRA (Ubiquitin-like domain-containing protein n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A448YZG3_9STRA)

HSP 1 Score: 199 bits (506), Expect = 7.710e-64
Identity = 98/128 (76.56%), Postives = 111/128 (86.72%), Query Frame = 0 
Query:    1 MQIFGKTLTGRTITLDVAPSDTVDGVKQTIQDREGIPASQQRLVFADKQLEDGRTLSDYNVEQASTLHVLLSLVGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 128
            MQIF KTLTG+TITLDV PSDT+D VK  IQD+EGIP  QQRL+FA KQLEDGRTLSDYN+++ STLH++L L GGVYDPSLA LA+ +N EK +CRKCYARLPP+A NCRKKKCGHT QLRPKKKLK
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAMLARKYNCEKAICRKCYARLPPKASNCRKKKCGHTAQLRPKKKLK 128
[Close]
BLAST of mRNA_L-elsbetiae_contig752.16409.1 vs. uniprot
Match: A0A0G4EN71_VITBC (Ubiquitin-like domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EN71_VITBC)

HSP 1 Score: 199 bits (506), Expect = 3.550e-63
Identity = 98/128 (76.56%), Postives = 112/128 (87.50%), Query Frame = 0 
Query:    1 MQIFGKTLTGRTITLDVAPSDTVDGVKQTIQDREGIPASQQRLVFADKQLEDGRTLSDYNVEQASTLHVLLSLVGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 128
            MQIF KTLTG+TITLDV PSDT++ VK  IQD+EGIP  QQRL+FA KQLEDGRTLSDYN+++ STLH++L L GGV +PSLA LA+ +N EKM+CRKCYARLPPRA NCRKKKCGHTNQLRPKKKLK
Sbjct:   48 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPSLAVLARKYNCEKMICRKCYARLPPRAVNCRKKKCGHTNQLRPKKKLK 175
[Close]
BLAST of mRNA_L-elsbetiae_contig752.16409.1 vs. uniprot
Match: K0RS17_THAOC (Ubiquitin-like domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RS17_THAOC)

HSP 1 Score: 199 bits (505), Expect = 6.740e-63
Identity = 98/128 (76.56%), Postives = 111/128 (86.72%), Query Frame = 0 
Query:    1 MQIFGKTLTGRTITLDVAPSDTVDGVKQTIQDREGIPASQQRLVFADKQLEDGRTLSDYNVEQASTLHVLLSLVGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 128
            M IF KTLTG+TITLDV PSDT+D VK  IQD+EGIP  QQRL+FA KQLEDGRTLSDYN+++ STLH++L L GGVYDPSLA LAK FN EK +CRKCYARLPP+A NCRKKKCGH++QLRPKKKLK
Sbjct:   57 MAIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLALLAKKFNCEKQICRKCYARLPPKATNCRKKKCGHSSQLRPKKKLK 184
[Close]
BLAST of mRNA_L-elsbetiae_contig752.16409.1 vs. uniprot
Match: RL40_NEUCR (Ubiquitin-60S ribosomal protein L40 n=7 Tax=Eukaryota TaxID=2759 RepID=RL40_NEUCR)

HSP 1 Score: 196 bits (498), Expect = 1.280e-62
Identity = 96/128 (75.00%), Postives = 111/128 (86.72%), Query Frame = 0 
Query:    1 MQIFGKTLTGRTITLDVAPSDTVDGVKQTIQDREGIPASQQRLVFADKQLEDGRTLSDYNVEQASTLHVLLSLVGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 128
            MQIF KTLTG+TITL+V  SDT+D VKQ IQD+EGIP  QQRL+FA KQLEDGRTLSDYN+++ STLH++L L GG+ +PSL ALA  FN +KM+CRKCYARLPPRA NCRK+KCGHTNQLRPKKKLK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKFNCDKMICRKCYARLPPRATNCRKRKCGHTNQLRPKKKLK 128
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig752.16409.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU48_ECTSI1.250e-7895.31Ubiquitin UbiA n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A8D0YMU0_PIG1.300e-7187.50Ubiquitin-60S ribosomal protein L40 n=1 Tax=Sus sc... [more]
A0A7S3H022_9STRA4.340e-6780.47Hypothetical protein n=5 Tax=Eukaryota TaxID=2759 ... [more]
W7TN89_9STRA6.810e-6781.25Ubiquitin n=2 Tax=Monodopsidaceae TaxID=425072 Rep... [more]
B7G5H7_PHATC4.650e-6578.91Ubiquitin extension protein 1/2 n=9 Tax=Bacillario... [more]
A0A1Z5JFA3_FISSO9.380e-6578.13Large subunit ribosomal protein L40e n=4 Tax=Stram... [more]
A0A448YZG3_9STRA7.710e-6476.56Ubiquitin-like domain-containing protein n=6 Tax=B... [more]
A0A0G4EN71_VITBC3.550e-6376.56Ubiquitin-like domain-containing protein n=1 Tax=V... [more]
K0RS17_THAOC6.740e-6376.56Ubiquitin-like domain-containing protein n=1 Tax=T... [more]
RL40_NEUCR1.280e-6275.00Ubiquitin-60S ribosomal protein L40 n=7 Tax=Eukary... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019956UbiquitinPRINTSPR00348UBIQUITINcoord: 53..74
score: 58.15
coord: 11..31
score: 57.57
coord: 32..52
score: 72.75
IPR001975Ribosomal protein L40eSMARTSM01377Ribosomal_L40e_3coord: 77..128
e-value: 1.5E-29
score: 114.2
IPR001975Ribosomal protein L40ePFAMPF01020Ribosomal_L40ecoord: 79..127
e-value: 4.0E-28
score: 97.1
IPR000626Ubiquitin domainSMARTSM00213ubq_7coord: 1..72
e-value: 1.7E-25
score: 100.7
IPR000626Ubiquitin domainPFAMPF00240ubiquitincoord: 6..72
e-value: 7.9E-26
score: 89.6
IPR000626Ubiquitin domainPROSITEPS50053UBIQUITIN_2coord: 1..76
score: 25.248
IPR038587Ribosomal protein L40e superfamilyGENE3D2.20.28.70coord: 79..128
e-value: 8.8E-28
score: 97.7
NoneNo IPR availableGENE3D3.10.20.90coord: 1..78
e-value: 9.1E-33
score: 113.9
NoneNo IPR availablePANTHERPTHR10666:SF298coord: 1..127
NoneNo IPR availablePANTHERPTHR10666UBIQUITINcoord: 1..127
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 1..77
IPR011332Zinc-binding ribosomal proteinSUPERFAMILY57829Zn-binding ribosomal proteinscoord: 76..128

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig752contigL-elsbetiae_contig752:26947..31027 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig752.16409.1mRNA_L-elsbetiae_contig752.16409.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig752 26947..31027 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig752.16409.1 ID=prot_L-elsbetiae_contig752.16409.1|Name=mRNA_L-elsbetiae_contig752.16409.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=129bp
MQIFGKTLTGRTITLDVAPSDTVDGVKQTIQDREGIPASQQRLVFADKQL
EDGRTLSDYNVEQASTLHVLLSLVGGVYDPSLAALAKTFNTEKMVCRKCY
ARLPPRAKNCRKKKCGHTNQLRPKKKLK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019956Ubiquitin
IPR001975Ribosomal_L40e
IPR000626Ubiquitin_dom
IPR038587L40e_sf
IPR029071Ubiquitin-like_domsf
IPR011332Ribosomal_zn-bd