prot_L-elsbetiae_contig7361.16234.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig7361.16234.1
Unique Nameprot_L-elsbetiae_contig7361.16234.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length884
Homology
BLAST of mRNA_L-elsbetiae_contig7361.16234.1 vs. uniprot
Match: D7FR27_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR27_ECTSI)

HSP 1 Score: 495 bits (1274), Expect = 1.620e-157
Identity = 468/936 (50.00%), Postives = 520/936 (55.56%), Query Frame = 0
Query:    1 GIGDLGVQWLSKGVSTLCRIQSRDPGGSGGGIRDLRLRGNNITHTGAQELARLLSEDRCARGLRELDLSMNTITADGFRPLAVSLRGCRELVRLDVAGCRLGPGGVDAAADLIAASGPKLRAVILTPKAEFADRVLGDRGGLAVALRQSLERLADSLPFAGSVVEVGLGAFLRGDADAAASIEETLRERRXXXXXXXXXXXXXXXXXXKRAATSVGXXXXXXXXXXXXXXXRAGGSSRSGEKKLQRGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSTPHASGLPTTPGSSGRSTAARSREAGSRTGPRGTGIERPRAGMERXXPSTTXXXXXXXXXXRSSPLSSGAGAAGSTSSSLHRASSKASMRGSSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAPRRRLHQGEELDSIDGFAQVEPRHAPAEPSAXXXXXXXXXXXXXXXXXXXXXXXXXXAGERGTYSRSGSGSLRDGVGGDRNEAGAGGPXXXXXXXXGGVVAGSIADVVSKVMGDTAAMADDQESPPSVAPSTWEWQGNPSNRPEEAAAAASSGRR-------------------GVGESATAXXXXRGEGRKALSRKSSAASVRTVPDSNGEPELSSGLASLAVTDERRP----LSQATTALEVSSXXXXXXQQ-LVTVADAGRMLAPLVAQEVEKETKKIEIRMK---------------------------NEMNVALRTMRSEMEAIDREGLMARVAMEKRLKTGIKRLLDRIDHLERRFTKMEKEDRKRLALEAANADAASXXXXXXXXXXXPALTDGLGGCAAPPSGDNLLLSPSSEGRADDVPESRPLVVREAWGGGGKVAFSAAASTVAS--DEEFSESGDESEADIVRMLEEKMAALEGKLLGHEERQRSDPRSGEGLAAGMPSAVWA 883
            GIGDLG QWL KG+S LCR Q +D  GSG GIRDLRLRGNNITHTGA+ELA +LSE RCAR LRELDLSMNTITADGFRPLAVSLRGCRELVRLDVAGCRLGPGGVDA ADLIAASGPKL AV+LTPKAEFADRVLGDRGGLAVALRQSL+RLADSLPFAGSVVE G+G                                       K  A   G                AGG++           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +    +G P  P  +G+                                +TT                       +T ++  RA+  A                                               AP RRLHQGEELDSI+GF   E R AP                    XXXXXXXXXXX    G Y         D     +  AG G          GGVV  SIADVVSKVMGDTAA+AD   +PP VAPSTW+W  N S  P  +AA                           VG  +  XXXX              AS  T P+S+ EPE+++G+ SLA++D  R      SQ TTA+EVS XXXXXX   LVTV DA RMLAPLVAQEVEKETKKIEIRM+                           NEMN ALRTMRSEMEAIDREGLMARVAMEKRLKTGIKRLL+RIDHLERRF+K+E+EDRKRLALEAA+  A  XXXXXXX        D +    +P S      + +   RA D PE+RPLV    W GG     SAA ST AS  D E+SE+GD++EADIVRMLEEKMAALEGKLLGHEERQR+DPR+ EGL  GM  A+WA
Sbjct:  188 GIGDLGAQWLCKGISALCRNQ-QDAAGSGSGIRDLRLRGNNITHTGAKELATILSEGRCARDLRELDLSMNTITADGFRPLAVSLRGCRELVRLDVAGCRLGPGGVDAVADLIAASGPKLTAVVLTPKAEFADRVLGDRGGLAVALRQSLQRLADSLPFAGSVVE-GIG---------------------------------------KSGARGTGIERPKAGLERQKA---AGGTAERQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGKPETGQPRQPVVAGQ-----------------------------HHKTTT-----------------------ATLAARDRAAVDAHA---------------------------------------------APHRRLHQGEELDSIEGF--TEQRQAPK--------LMPPTRELLASXXXXXXXXXXXXXNTGFYG--------DXXXXXKKAAGPGPSAGLEASASGGVVE-SIADVVSKVMGDTAAVADGLVTPPPVAPSTWDWDTN-SGGPAGSAATGKXXXXXXXXXXXXXXXXXXXMVPSSVGPVSXXXXXXXXXXXXXXXXXXXXASFSTAPESSSEPEVAAGMTSLALSDGSRSGLNSSSQGTTAIEVSXXXXXXXXXXLVTVEDASRMLAPLVAQEVEKETKKIEIRMQRRVPSSVVCAAAKRVRLALLKHLGAWQNEMNSALRTMRSEMEAIDREGLMARVAMEKRLKTGIKRLLERIDHLERRFSKLEREDRKRLALEAASVAAXXXXXXXXXGGA----ADVVVRLQSPSSASETSAALNKSNRAPDTPEARPLVT---WSGGDGDFSSAAGSTAASSCDGEYSEAGDDTEADIVRMLEEKMAALEGKLLGHEERQRTDPRAAEGL--GMSPAMWA 953          
BLAST of mRNA_L-elsbetiae_contig7361.16234.1 vs. uniprot
Match: A0A8C2F7S0_CYPCA (Uncharacterized protein n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2F7S0_CYPCA)

HSP 1 Score: 58.2 bits (139), Expect = 3.330e-5
Identity = 43/128 (33.59%), Postives = 71/128 (55.47%), Query Frame = 0
Query:   34 DLRLRGNNITHTGAQELARLLSEDRCARGLRELDLSMNTITADGFRPLAVSLRGCRELVRLDVAGCRLGPGGVDAAADLIAASGPKLRAVIL--TPKAE----FADRVLGDRGGLAVALRQSLERLAD 155
            +L L GN + +TG +++  LL + +C+  L++L LS  +IT +G++ LA SL+    L+ LD+ G   GP GV    DL+ +   KL+ + L  +P A+    +  +VLG    L   L  S ++L D
Sbjct:   76 ELDLSGNKLGNTGIEKICILLKKPQCS--LKKLKLSDCSITEEGYKTLASSLKSNSNLIELDLTGNDPGPSGVQGLIDLLRSGCCKLKTLRLLKSPAAQETCDYLTKVLGKSPLLLTELDLSEDKLGD 201          
BLAST of mRNA_L-elsbetiae_contig7361.16234.1 vs. uniprot
Match: A0A8C2F6G5_CYPCA (Uncharacterized protein n=3 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2F6G5_CYPCA)

HSP 1 Score: 58.2 bits (139), Expect = 5.690e-5
Identity = 43/128 (33.59%), Postives = 71/128 (55.47%), Query Frame = 0
Query:   34 DLRLRGNNITHTGAQELARLLSEDRCARGLRELDLSMNTITADGFRPLAVSLRGCRELVRLDVAGCRLGPGGVDAAADLIAASGPKLRAVIL--TPKAE----FADRVLGDRGGLAVALRQSLERLAD 155
            +L L GN + +TG +++  LL + +C+  L++L LS  +IT +G++ LA SL+    L+ LD+ G   GP GV    DL+ +   KL+ + L  +P A+    +  +VLG    L   L  S ++L D
Sbjct:   76 ELDLSGNKLGNTGIEKICILLKKPQCS--LKKLKLSDCSITEEGYKTLASSLKSNSNLIELDLTGNDPGPSGVQGLIDLLRSGCCKLKTLRLLKSPAAQETCDYLTKVLGKSPLLLTELDLSEDKLGD 201          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7361.16234.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FR27_ECTSI1.620e-15750.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8C2F7S0_CYPCA3.330e-533.59Uncharacterized protein n=1 Tax=Cyprinus carpio Ta... [more]
A0A8C2F6G5_CYPCA5.690e-533.59Uncharacterized protein n=3 Tax=Cyprinus carpio Ta... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 711..738
NoneNo IPR availableCOILSCoilCoilcoord: 667..702
NoneNo IPR availableCOILSCoilCoilcoord: 842..862
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 29..56
e-value: 3.9
score: 13.0
coord: 60..87
e-value: 0.1
score: 21.7
coord: 88..115
e-value: 5.6
score: 11.9
NoneNo IPR availablePANTHERPTHR24113FAMILY NOT NAMEDcoord: 32..151
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 2..121
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 63..81
e-value: 0.17
score: 12.0
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..154
e-value: 8.7E-18
score: 66.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7361contigL-elsbetiae_contig7361:464..7013 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7361.16234.1mRNA_L-elsbetiae_contig7361.16234.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig7361 464..7013 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig7361.16234.1 ID=prot_L-elsbetiae_contig7361.16234.1|Name=mRNA_L-elsbetiae_contig7361.16234.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=884bp
GIGDLGVQWLSKGVSTLCRIQSRDPGGSGGGIRDLRLRGNNITHTGAQEL
ARLLSEDRCARGLRELDLSMNTITADGFRPLAVSLRGCRELVRLDVAGCR
LGPGGVDAAADLIAASGPKLRAVILTPKAEFADRVLGDRGGLAVALRQSL
ERLADSLPFAGSVVEVGLGAFLRGDADAAASIEETLRERRERADGGDGGS
GGGNGDGGKRAATSVGAAAAAAAAAGGGGSGRAGGSSRSGEKKLQRGSSN
TAGASSRPGGVRARTDGPGTPSAQTSTGSRRAGMSTPHASGLPTTPGSSG
RSTAARSREAGSRTGPRGTGIERPRAGMERPRPSTTERPRRGTGGPRSSP
LSSGAGAAGSTSSSLHRASSKASMRGSSGSGTPSSSERSRQQHRTTATAT
TTAATLAARDRAAAAAAVPAPRRRLHQGEELDSIDGFAQVEPRHAPAEPS
AAAAAAAAASSSRRPPGSKAAAAASAAAGERGTYSRSGSGSLRDGVGGDR
NEAGAGGPDAAASAGDGGVVAGSIADVVSKVMGDTAAMADDQESPPSVAP
STWEWQGNPSNRPEEAAAAASSGRRGVGESATAAGGGRGEGRKALSRKSS
AASVRTVPDSNGEPELSSGLASLAVTDERRPLSQATTALEVSSGGGGGGQ
QLVTVADAGRMLAPLVAQEVEKETKKIEIRMKNEMNVALRTMRSEMEAID
REGLMARVAMEKRLKTGIKRLLDRIDHLERRFTKMEKEDRKRLALEAANA
DAASAAAAAAAAAAPPALTDGLGGCAAPPSGDNLLLSPSSEGRADDVPES
RPLVVREAWGGGGKVAFSAAASTVASDEEFSESGDESEADIVRMLEEKMA
ALEGKLLGHEERQRSDPRSGEGLAAGMPSAVWA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf