prot_L-elsbetiae_contig7335.16209.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig7335.16209.1
Unique Nameprot_L-elsbetiae_contig7335.16209.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length569
Homology
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BLAST of mRNA_L-elsbetiae_contig7335.16209.1 vs. uniprot
Match: A0A835ZJK2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJK2_9STRA)

HSP 1 Score: 162 bits (410), Expect = 2.590e-39
Identity = 110/364 (30.22%), Postives = 158/364 (43.41%), Query Frame = 0 
Query:  163 DSRRAILLKLTCLNLFLALILIIVGGVGPQYPGHSGTTNNPVPNWGSRRLTTHVSPLYQANCPTEEVDSANASILRSALIVGLVIWFTQPCSAHFISTQVDRAGAAATLLTSVASALTCLGSFVVVMLDINYIAGCCSLLEDNCEVSNLCTQFVDDCCIGNDV-----------------------------------------------------------------------------------------------------------------EDYCGNPSYHIGAVSMIFLVFVSTMSMVIMASTITCRCWLDSDPEKQAMLMVLTGSPY--GSPRGSAHPESPTFSPRSTLLSGLGFGG 411
            D R+ ILL++T +NL L ++++++  +GP YPGH          +G+       S +Y   C + EV  AN SIL SALI G+VIW  QP +A  I  QV + GA  TLL+S   A+TC  +F+V++LD+ Y+A CC+ L++ CE S+LCT+ +D CCIG  V                                                                                                                 E YC +P Y     SMIF+VF+ST +  +MA TI C+CWLD+DPEKQA++MV++ SP+       S+   +P F+P  +   G  FGG
Sbjct:   70 DLRQVILLRMTYVNLALGVVMVVLYALGPSYPGH----------FGALTQARADSVIYGDTCASGEVADANDSILHSALIAGVVIWMLQPVAAWAIHKQVGQRGAHCTLLSSCVCAVTCACAFLVILLDMEYVADCCAQLQNECERSDLCTELIDTCCIGASVXXXXXXXXXXXXXXXXXXXXXVVSSSQYLMIEFILKSVVSALHDEYYNRRMYESDENHDSDSRSRCATHCERNRLYRQLMTSCMELVDMCGDEHKHGLIASSLLSLRCLDQQQESYCEDPKYRYAGASMIFVVFISTFAQAMMACTIGCKCWLDADPEKQALMMVVSSSPHFNNGNFNSSTASTPMFTP--SPAGGQHFGG 421
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7335.16209.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZJK2_9STRA2.590e-3930.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 469..490
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..167
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 190..235
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 288..340
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 236..258
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 168..189
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 265..287
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 366..568
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 259..264
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 341..365
NoneNo IPR availableTMHMMTMhelixcoord: 334..356
NoneNo IPR availableTMHMMTMhelixcoord: 265..287
NoneNo IPR availableTMHMMTMhelixcoord: 236..258
NoneNo IPR availableTMHMMTMhelixcoord: 168..190

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7335contigL-elsbetiae_contig7335:685..8334 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7335.16209.1mRNA_L-elsbetiae_contig7335.16209.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig7335 685..8334 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig7335.16209.1 ID=prot_L-elsbetiae_contig7335.16209.1|Name=mRNA_L-elsbetiae_contig7335.16209.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=569bp
QHLKNSRPVHQPAESSKIIEGTPDPSGNQRTSSLRLGGVRVFTEEKLPTE
KLSSESASRAEEGSFSLAFSEAATSERTHGRSDVMLADRPSPRRPAPINV
DDSDGVGGQPPGRWRQLSPRQVTADQLLGRKGGGAGGGDTGIFGETSHTP
GGSPRFSSKRRRDSRRAILLKLTCLNLFLALILIIVGGVGPQYPGHSGTT
NNPVPNWGSRRLTTHVSPLYQANCPTEEVDSANASILRSALIVGLVIWFT
QPCSAHFISTQVDRAGAAATLLTSVASALTCLGSFVVVMLDINYIAGCCS
LLEDNCEVSNLCTQFVDDCCIGNDVEDYCGNPSYHIGAVSMIFLVFVSTM
SMVIMASTITCRCWLDSDPEKQAMLMVLTGSPYGSPRGSAHPESPTFSPR
STLLSGLGFGGTTTSSSGGTLTKRPPHNQPISSVAAAAASGQARHGNGST
GGGATGGRMVSPPPAREKCPQCGAVFGDIATLVNHVERFHAKLTRSPFNE
APVRIPWQGQAVRVTAAASGGVGDRGGRIPPSLTRKGSTYEPDEGPVVLV
RPPAVGSVSVVAARGSSP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type