prot_L-elsbetiae_contig6700.15443.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6700.15443.1
Unique Nameprot_L-elsbetiae_contig6700.15443.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length160
Homology
BLAST of mRNA_L-elsbetiae_contig6700.15443.1 vs. uniprot
Match: D8LD41_ECTSI (SDH3, succinate dehydrogenase subunit 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD41_ECTSI)

HSP 1 Score: 240 bits (613), Expect = 6.520e-79
Identity = 132/158 (83.54%), Postives = 140/158 (88.61%), Query Frame = 0
Query:    2 QGRPLAAAATAPASSRVFSSSXXXPSPKKEGESYTSRQAKTGRPVSPHVTIYDFPPAALSSIANRVTGVALVAGLYGISGASLVGCDAPALMSALGASGVGPAVKLAVSFPLVYHYLGAVRHTVWDYVPETLQTEGVAKTSYALLGVSGAISLGLAAV 159
            +GRPL AA  + A SR  SSS       KE ESYT+RQA+TGRPVSPHVTIYDFPPAALSSIANRVTGVALVAGLYGISGA+LVGCDA  LMSALG+SGVGPAVKLAVSFPLVYHYLGAVRHTVWDY+PETLQT GVAKTSYALLGVSGA+SLGLAAV
Sbjct:   23 KGRPLVAAVGSHALSRSSSSSASD----KEKESYTARQARTGRPVSPHVTIYDFPPAALSSIANRVTGVALVAGLYGISGATLVGCDAAGLMSALGSSGVGPAVKLAVSFPLVYHYLGAVRHTVWDYMPETLQTAGVAKTSYALLGVSGAVSLGLAAV 176          
BLAST of mRNA_L-elsbetiae_contig6700.15443.1 vs. uniprot
Match: A0A835YMP1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMP1_9STRA)

HSP 1 Score: 149 bits (375), Expect = 4.900e-43
Identity = 73/125 (58.40%), Postives = 88/125 (70.40%), Query Frame = 0
Query:   35 YTSRQAKTGRPVSPHVTIYDFPPAALSSIANRVTGVALVAGLYGISGASLVGCDAPALMSALGASGVGPAVKLAVSFPLVYHYLGAVRHTVWDYVPETLQTEGVAKTSYALLGVSGAISLGLAAV 159
            Y  RQ KTGRPVSPHVT Y FP  A+SSI NRVTGV LV GLYGI   +LVG D   LM+ LG + V P  K+ V+FPL+YHYLGA RHT+WD+ PET+    VA++SY L G +G ++L  A V
Sbjct:   30 YIERQNKTGRPVSPHVTAYRFPVVAISSITNRVTGVGLVGGLYGIGALALVGVDVQGLMAMLGETAVAPLAKMVVTFPLIYHYLGAARHTIWDFKPETVNNASVAQSSYILFGAAGGLTLLTAVV 154          
BLAST of mRNA_L-elsbetiae_contig6700.15443.1 vs. uniprot
Match: A0A7S1XVJ2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVJ2_9STRA)

HSP 1 Score: 145 bits (366), Expect = 2.410e-41
Identity = 74/125 (59.20%), Postives = 90/125 (72.00%), Query Frame = 0
Query:   33 ESYTSRQAKTGRPVSPHVTIYDFPPAALSSIANRVTGVALVAGLYGISGASLVGCDAPALMSALGASGVGPAVKLAVSFPLVYHYLGAVRHTVWDYVPETLQTEGVAKTSYALLGVSGAISLGLA 157
            E Y++RQ KTGRPVSPHVTIY FP  A+SSI+ RVTG  L  GL GI   +LVG D PALMSA+G+S +GP  K AVS+ LVYH+ GA RH VWD  PE L+ + V +TS  ++G +G IS GLA
Sbjct:   53 EKYSARQKKTGRPVSPHVTIYAFPAVAISSISVRVTGCILSVGLGGIGALALVGVDTPALMSAVGSSAIGPLAKFAVSYSLVYHFFGAARHYVWDQSPEMLENDQVYQTSLGIMGAAGVISAGLA 177          
BLAST of mRNA_L-elsbetiae_contig6700.15443.1 vs. uniprot
Match: A0A836CCH7_9STRA (Transmembrane subunit of succinate dehydrogenase/Fumarate reductase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCH7_9STRA)

HSP 1 Score: 136 bits (343), Expect = 2.210e-38
Identity = 68/127 (53.54%), Postives = 87/127 (68.50%), Query Frame = 0
Query:   31 EGESYTSRQAKTGRPVSPHVTIYDFPPAALSSIANRVTGVALVAGLYGISGASLVGCDAPALMSALGASGVGPAVKLAVSFPLVYHYLGAVRHTVWDYVPETLQTEGVAKTSYALLGVSGAISLGLA 157
            E  SY   Q + GRP+SPHVT Y FP AA+SSI NR+TGVALV GLYGI   SLVG DA  +MS +  S +   VKL V+FPL+YHY  A RHT+WD+ PET++ + V K+S  +   +G++SL  A
Sbjct:   11 ESHSYDELQQRRGRPISPHVTNYRFPIAAISSITNRITGVALVGGLYGIGALSLVGVDAQHIMSVIHDSILAGPVKLVVTFPLIYHYFAAARHTIWDFYPETVENKSVEKSSLLIFAAAGSLSLAAA 137          
BLAST of mRNA_L-elsbetiae_contig6700.15443.1 vs. uniprot
Match: A0A8J6C331_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C331_DIALT)

HSP 1 Score: 129 bits (323), Expect = 3.690e-35
Identity = 69/129 (53.49%), Postives = 84/129 (65.12%), Query Frame = 0
Query:   33 ESYTSRQAKTGRPVSPHVTIYDFPPAALSSIANRVTGVALVAGLYGISGASLVGCDAPALMSA--LGASGVGPAVKLAVSFPLVYHYLGAVRHTVWDYVPETLQTEGVAKTSYALLGVSGAISLGLAAV 159
            ESYT R  KTGRPVSPHVTIY FP AALSSI  R+TGV L  G   I  ASL G D PAL+S+  L A  + P  K+A+++PL YH+L A+RH  WD+    L  + V  TS AL   +G +SLG AA+
Sbjct:   26 ESYTERMDKTGRPVSPHVTIYKFPAAALSSITTRITGVMLTVGTSAIGAASLAGADVPALVSSCQLAAPALVPVAKVAITYPLTYHWLSAMRHAYWDWTASGLHIKTVRTTSLALFAGAGLLSLGFAAI 154          
BLAST of mRNA_L-elsbetiae_contig6700.15443.1 vs. uniprot
Match: A0A7S3MID7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MID7_9STRA)

HSP 1 Score: 128 bits (321), Expect = 7.850e-35
Identity = 69/125 (55.20%), Postives = 86/125 (68.80%), Query Frame = 0
Query:   34 SYTSRQAKTGRPVSPHVTIYDFPPAALSSIANRVTGVALVAGLYGISGASLVGCDAPALMSALG-ASGVGPAVKLAVSFPLVYHYLGAVRHTVWDYVPETLQTEGVAKTSYALLGVSGAISLGLA 157
            SY+  QAK GRP+SPHV IY FPPAAL+SI NRVTG  L  G+ GI   +L G D  ++MS +G  S VG   KL+V+FPLVYHYL  +RH  WD  PE L T+ V ++S+ L+G S AIS+ LA
Sbjct:   30 SYSEEQAKKGRPISPHVEIYKFPPAALTSITNRVTGGLLSVGMTGIGVLALAGADVSSIMSNIGDISVVGQTAKLSVAFPLVYHYLAGIRHIAWDRNPELLHTDKVTQSSHVLIGSSVAISVVLA 154          
BLAST of mRNA_L-elsbetiae_contig6700.15443.1 vs. uniprot
Match: W7TK90_9STRA (Succinate dehydrogenase cytochrome b subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TK90_9STRA)

HSP 1 Score: 129 bits (323), Expect = 8.510e-35
Identity = 70/122 (57.38%), Postives = 83/122 (68.03%), Query Frame = 0
Query:   33 ESYTSRQAKTGRPVSPHVTIYDFPPAALSSIANRVTGVALVAGLYGISGASLVGCDAPALMSALGASGVGPAVKLAVSFPLVYHYLGAVRHTVWDYVPETLQTEGVAKTSYALLGVSGAISL 154
            E+YT RQA+TGRPVSPHVTIY FP  AL+SI+ RVTG  L  GL GIS  +L G D P LMS+LG S VG   K+   FPL++HY   +RH  WD  P  L  +GVA+ SY LLG + AISL
Sbjct:   46 ETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSSLGNSMVGVPAKVLFGFPLIFHYGSGLRHFFWDNNPNFLNNKGVAEASYILLGSTVAISL 167          
BLAST of mRNA_L-elsbetiae_contig6700.15443.1 vs. uniprot
Match: A0A7S1YU13_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YU13_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.180e-32
Identity = 68/127 (53.54%), Postives = 82/127 (64.57%), Query Frame = 0
Query:   33 ESYTSRQAKTGRPVSPHVTIYDFPPAALSSIANRVTGVALVAGLYGISGASLVGCDAPA--LMSALGASG--VGPAVKLAVSFPLVYHYLGAVRHTVWDYVPETLQTEGVAKTSYALLGVSGAISLG 155
            ++Y+ R A+TGRPVSPH+TIY FP  ALSSI NRVTGVAL  G  G+    L+G    A  L+  +G+SG  VG   K AV+FP VYHY+GA+RH  WD  PE L+   V K S AL G S  IS G
Sbjct:    7 QNYSERMARTGRPVSPHLTIYSFPVGALSSITNRVTGVALTFGAAGVGAIELLGGSGAAAGLLQDIGSSGALVGCTAKFAVAFPCVYHYIGAIRHLAWDNRPELLENTDVEKASIALFGSSLLISAG 133          
BLAST of mRNA_L-elsbetiae_contig6700.15443.1 vs. uniprot
Match: A0A7S2HYL2_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HYL2_9STRA)

HSP 1 Score: 122 bits (306), Expect = 3.470e-32
Identity = 66/127 (51.97%), Postives = 81/127 (63.78%), Query Frame = 0
Query:   33 ESYTSRQAKTGRPVSPHVTIYDFPPAALSSIANRVTGVALVAGLYGISGASLVGCDAPA--LMSALGASG--VGPAVKLAVSFPLVYHYLGAVRHTVWDYVPETLQTEGVAKTSYALLGVSGAISLG 155
            ++Y  R AKTGRPVSPH+TIY FP  A+SSI NRVTG AL  G  G+    LVG    A  LM  + ASG  V  + K AV+FP ++HY GA+RH  WDY+PE L    V K S+AL G S  +S+G
Sbjct:   57 QNYKERMAKTGRPVSPHLTIYHFPVGAMSSITNRVTGCALTFGAAGVGAIELVGGSGAAMGLMQDIAASGGLVAASAKFAVAFPCIFHYFGAIRHIAWDYMPEYLNNPDVEKASWALFGSSLVVSVG 183          
BLAST of mRNA_L-elsbetiae_contig6700.15443.1 vs. uniprot
Match: A0A448Z9H1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z9H1_9STRA)

HSP 1 Score: 120 bits (302), Expect = 9.440e-32
Identity = 68/128 (53.12%), Postives = 84/128 (65.62%), Query Frame = 0
Query:   33 ESYTSRQAKTGRPVSPHVTIYDFPPAALSSIANRVTGVALVAGLYGISGASLVGCDAPAL--MSALGASG--VGPAVKLAVSFPLVYHYLGAVRHTVWDYVPET-LQTEGVAKTSYALLGVSGAISLG 155
            ++YT R  KTGRPVSPHVTIY  P  A +SI  RVTG+ L  G +G+    L+G    +L  M ++G+SG  V    K AV+FPLVYHYLGAV H VWDY P+  L  E V K+S AL+G +G ISLG
Sbjct:   42 QNYTERMQKTGRPVSPHVTIYALPVPAFASITTRVTGIMLSFGAFGVGAIDLMGGPGASLSLMESIGSSGFLVASPAKFAVAFPLVYHYLGAVXHFVWDYFPDKYLNNEDVQKSSIALIGSAGLISLG 169          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6700.15443.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD41_ECTSI6.520e-7983.54SDH3, succinate dehydrogenase subunit 3 n=2 Tax=Ec... [more]
A0A835YMP1_9STRA4.900e-4358.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1XVJ2_9STRA2.410e-4159.20Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A836CCH7_9STRA2.210e-3853.54Transmembrane subunit of succinate dehydrogenase/F... [more]
A0A8J6C331_DIALT3.690e-3553.49Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A7S3MID7_9STRA7.850e-3555.20Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
W7TK90_9STRA8.510e-3557.38Succinate dehydrogenase cytochrome b subunit n=2 T... [more]
A0A7S1YU13_9STRA1.180e-3253.54Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2HYL2_9STRA3.470e-3251.97Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A448Z9H1_9STRA9.440e-3253.13Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000701Succinate dehydrogenase/fumarate reductase type B, transmembrane subunitPFAMPF01127Sdh_cytcoord: 43..154
e-value: 7.1E-15
score: 55.1
IPR034804Fumarate reductase/succinate dehydrogenase, transmembrane subunitGENE3D1.20.1300.10coord: 25..159
e-value: 4.9E-30
score: 106.5
IPR034804Fumarate reductase/succinate dehydrogenase, transmembrane subunitSUPERFAMILY81343Fumarate reductase respiratory complex transmembrane subunitscoord: 41..157
IPR014314Succinate dehydrogenase, cytochrome b556 subunitTIGRFAMTIGR02970TIGR02970coord: 44..154
e-value: 3.9E-15
score: 54.1
IPR014314Succinate dehydrogenase, cytochrome b556 subunitPIRSFPIRSF000178SDH_cyt_b560coord: 13..159
e-value: 2.6E-25
score: 86.6
NoneNo IPR availablePANTHERPTHR10978:SF5SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT, MITOCHONDRIALcoord: 11..158
NoneNo IPR availablePANTHERPTHR10978SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNITcoord: 11..158
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..159

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6700contigL-elsbetiae_contig6700:2923..5297 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6700.15443.1mRNA_L-elsbetiae_contig6700.15443.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6700 2923..6014 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6700.15443.1 ID=prot_L-elsbetiae_contig6700.15443.1|Name=mRNA_L-elsbetiae_contig6700.15443.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=160bp
MQGRPLAAAATAPASSRVFSSSSSSPSPKKEGESYTSRQAKTGRPVSPHV
TIYDFPPAALSSIANRVTGVALVAGLYGISGASLVGCDAPALMSALGASG
VGPAVKLAVSFPLVYHYLGAVRHTVWDYVPETLQTEGVAKTSYALLGVSG
AISLGLAAV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000701SuccDH_FuR_B_TM-su
IPR034804SQR/QFR_C/D
IPR014314Succ_DH_cytb556