prot_L-elsbetiae_contig6575.15278.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6575.15278.1
Unique Nameprot_L-elsbetiae_contig6575.15278.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length308
Homology
BLAST of mRNA_L-elsbetiae_contig6575.15278.1 vs. uniprot
Match: A0A6H5KHM1_9PHAE (HAMP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KHM1_9PHAE)

HSP 1 Score: 305 bits (781), Expect = 4.450e-96
Identity = 176/256 (68.75%), Postives = 201/256 (78.52%), Query Frame = 0
Query:   49 QVCALGNGVCSGEAGGTWDGLLSATTDGESIVFTSXXXXXXXXXXXXXXXXXXPVKATFATTTSGGEGTVTHYILSAVPRDEIFGPVKGMADLIQESTTQIIITTAIVAGCTLVAVAAAVYFLSGSITRPIVKMTSAARSIARDGAKTDVFGSVAAAWGGGRKXXXXXXXXXSSMDSRTAGRYSIDRTRCLDYLLCRGDDEISTLAREFSLMITGLGKRGSAAEAKGLAESSAYPKNPFTTKYFRPAPIAPSAPSA 304
            +VC LGNG+CSG+ G +W+ LL  T +G    F +     XXXXXXXXX    P+  TF T  SGGEG VTHYILSAVPRDEIF PV GMADLI+ESTT+I++TTAIVA  TLVAVA +VYFL+GSITRPIVKMTSAARSI++DGAKTDVFGSVAA WGG R           S+DSRTAGRY+++RT CLDYLLCRGDDEISTLAREF LMITGLG+RG+AAEA GLAE+S YPKNPFTT + RP P  P+AP A
Sbjct:  358 KVCDLGNGICSGDEGDSWEDLLLETKNGGIKTFKAVSTTGXXXXXXXXXIAA-PITTTFGTAVSGGEGKVTHYILSAVPRDEIFQPVDGMADLIRESTTEIMVTTAIVACSTLVAVALSVYFLAGSITRPIVKMTSAARSISKDGAKTDVFGSVAATWGGRRDGSSGAG---DSIDSRTAGRYTMNRTACLDYLLCRGDDEISTLAREFQLMITGLGRRGAAAEATGLAEASVYPKNPFTTDFIRPPPTNPTAPDA 609          
BLAST of mRNA_L-elsbetiae_contig6575.15278.1 vs. uniprot
Match: D8LT17_ECTSI (Methyl-accepting chemotaxis protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT17_ECTSI)

HSP 1 Score: 268 bits (686), Expect = 5.150e-82
Identity = 158/254 (62.20%), Postives = 178/254 (70.08%), Query Frame = 0
Query:   50 VCALGNGVCSGEAGGTWDGLLSATTDGESIVFTSXXXXXXXXXXXXXXXXXXPVKATFATTTSGGEGTVTHYILSAVPRDEIFGPVKGMADLIQESTTQIIITTAIVAGCTLVAVAAAVYFLSGSITRPIVKMTSAARSIARDGAKTDVFGSVAAAWGGGRKXXXXXXXXXSSMDSRTAGRYSIDRTRCLDYLLCRGDDEISTLAREFSLMITGLGKRGSAAEAKGLAESSA-YPKNPFT-TKYFRPAPIAPSA 301
            VCA+GNG+CSG  G  W  LL+   +G    FTS                  PV+  FAT TSGG GTVTHYILSAVPR+EIF PV GMAD I++ST QII+TTAIVA  TLVAVA +VYFL+GSITRPIVKMTSAARSIA DGAKTDVFGSV A WG  R+           +D  T GR++++RT CLDYLLCRGDDEISTL REFSLMITGLG+RGSAAEA GL +  A YPKNP+  T   RP P  PSA
Sbjct:  354 VCAIGNGICSGSDGDEWVDLLAEIENGGIKSFTSTSTAGVDEEWILVAA---PVEGNFATATSGGAGTVTHYILSAVPRNEIFEPVVGMADSIRDSTVQIIVTTAIVACFTLVAVALSVYFLAGSITRPIVKMTSAARSIAADGAKTDVFGSVMATWGA-RRDSARDSADGRGIDVSTPGRFTVNRTACLDYLLCRGDDEISTLGREFSLMITGLGRRGSAAEATGLMDERAGYPKNPYAATIVKRPPPTGPSA 603          
BLAST of mRNA_L-elsbetiae_contig6575.15278.1 vs. uniprot
Match: A0A6H5KHM8_9PHAE (HAMP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHM8_9PHAE)

HSP 1 Score: 248 bits (633), Expect = 3.980e-74
Identity = 138/202 (68.32%), Postives = 155/202 (76.73%), Query Frame = 0
Query:  102 PVKATFATTTSGGEGTVTHYILSAVPRDEIFGPVKGMADLIQESTTQIIITTAIVAGCTLVAVAAAVYFLSGSITRPIVKMTSAARSIARDGAKTDVFGSVAAAWGGGRKXXXXXXXXXSSMDSRTAGRYSIDRTRCLDYLLCRGDDEISTLAREFSLMITGLGKRGSAAEAKGLAES-SAYPKNPFTTKYF-RPAPIAPSA 301
            PV+  FAT TSGG GTVTHYILSAVPR+EIF PV GMADLI++ST QII+TTAIVA  T+VAVA +VYFL+GSITRPIVKMTSAARSIA DGAKTDVFGSV A WG  R+            D  T GR++++RT CLDYLLCRGDDEISTL REF LMITGLG+RGSAAEA GL +  + YPKNP+      RP P  PSA
Sbjct:  408 PVEGNFATATSGGAGTVTHYILSAVPRNEIFEPVVGMADLIRDSTVQIIVTTAIVACFTMVAVALSVYFLAGSITRPIVKMTSAARSIAADGAKTDVFGSVTATWGA-RRDSARDSARGCGTDISTPGRFTVNRTACLDYLLCRGDDEISTLGREFQLMITGLGRRGSAAEATGLMDKRTGYPKNPYAAMIVKRPPPTGPSA 608          
BLAST of mRNA_L-elsbetiae_contig6575.15278.1 vs. uniprot
Match: D8LT16_ECTSI (HAMP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT16_ECTSI)

HSP 1 Score: 225 bits (574), Expect = 1.420e-65
Identity = 142/241 (58.92%), Postives = 155/241 (64.32%), Query Frame = 0
Query:   50 VCALGNGVCSGEAGGTWDGLLSATTDGESIVFTSXXXXXXXXXXXXXXXXXXPVKATFATTTSGGEGTVTHYILSAVPRDEIFGPVKGMADLIQESTTQIIITTAIVAGCTLVAVAAAVYFLSGSITRPIVKMTSAARSIARDGAKTDVFGSVAAAWGGGRKXXXXXXXXXSSMDSRTAGRYSIDRTRCLDYLLCRGDDEISTLAREFSLMITGLGKRGSAAEAKGLAESSA-YPKNPFTT 289
            VC LG G+CSG  G  W  L++ T +GE   FTS                  PV+ TF T  SGG GTVTHYILSAVPR+EIF  V GM D+I +ST QIII TAIVA CTLVAVA +VYFL+GSI RPIVKMT AARSI  DGA+TDVFGSVAA WG              S      GR+       LDYLLCRGDDEISTL REF LMITGLGKRG AAEA GL E  A YP NPFT+
Sbjct:  355 VCDLGIGICSGRDGDGWTDLIADTENGEVKSFTSKSTDGVDEEWILVAA---PVEGTFDTAISGGAGTVTHYILSAVPRNEIFETVVGMVDVIWDSTIQIIIPTAIVACCTLVAVALSVYFLAGSIVRPIVKMTKAARSITADGAETDVFGSVAADWG----------IKKDSARGVGGGRF-------LDYLLCRGDDEISTLGREFQLMITGLGKRGLAAEAIGLMEERAGYPMNPFTS 575          
BLAST of mRNA_L-elsbetiae_contig6575.15278.1 vs. uniprot
Match: A0A6H5JHX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHX1_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 3.750e-54
Identity = 139/258 (53.88%), Postives = 149/258 (57.75%), Query Frame = 0
Query:   44 SARKLQVCALGNGVCSGEAGGTWDGLLSATTDGESIVFTSXXXXXXXXXXXXXXXXXXPVKATFATTTSGGEGTVTHYILSAVPRDEIFGPVKGMADLIQEST----------------TQIIITTAIVAGCTLVAVAAAVYFLSGSITRPIVKMTSAARSIARDGAKTDVFGSVAAAWGGGRKXXXXXXXXXSSMDS-RTAGRYSIDRTRCLDYLLCRGDDEISTLAREFSLMITGLGKRGSAAEAKGLAES-SAYP 283
            S   L VC L  G+ SG  G  W  L + T +GE   FTS                  PV+ TF T  SGG GTV HYILSAVPR+EIF PV GM  LI +ST                 QIII TAIVA CTLVAVA AVYFL+GSITRPIVKMT AARS   DGA+ DVFGSVAA  G                DS R AG       R LDYLLCRGDDEISTL REF LMITGLGKRGSAAEA G+ E  + YP
Sbjct:  196 SQEALTVCDLRIGISSGRDGDGWTDLKADTENGEVKSFTSSPPTASTEWILVAA----PVEGTFDTAISGGAGTVAHYILSAVPRNEIFEPVVGMMGLIWDSTIQEFHVHLLSLFSSLHVQIIIPTAIVACCTLVAVALAVYFLAGSITRPIVKMTKAARSTTADGAEHDVFGSVAADRG-------------IKKDSVRGAGG-----ARFLDYLLCRGDDEISTLGREFQLMITGLGKRGSAAEAIGVMEEHTGYP 431          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6575.15278.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KHM1_9PHAE4.450e-9668.75HAMP domain-containing protein n=2 Tax=Ectocarpus ... [more]
D8LT17_ECTSI5.150e-8262.20Methyl-accepting chemotaxis protein n=1 Tax=Ectoca... [more]
A0A6H5KHM8_9PHAE3.980e-7468.32HAMP domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LT16_ECTSI1.420e-6558.92HAMP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JHX1_9PHAE3.750e-5453.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.1480.50coord: 135..200
e-value: 1.7E-5
score: 26.7
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 149..172
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..148
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 173..307
NoneNo IPR availableTMHMMTMhelixcoord: 149..171

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6575contigL-elsbetiae_contig6575:7125..10366 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6575.15278.1mRNA_L-elsbetiae_contig6575.15278.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6575 5537..10404 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6575.15278.1 ID=prot_L-elsbetiae_contig6575.15278.1|Name=mRNA_L-elsbetiae_contig6575.15278.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=308bp
MPGLETIRPKYSLRLVTCLLHVPRAERCATVVVLSAEGCVCMLSARKLQV
CALGNGVCSGEAGGTWDGLLSATTDGESIVFTSSSASTDDGEEEESILIA
APVKATFATTTSGGEGTVTHYILSAVPRDEIFGPVKGMADLIQESTTQII
ITTAIVAGCTLVAVAAAVYFLSGSITRPIVKMTSAARSIARDGAKTDVFG
SVAAAWGGGRKGGSGTGGGGSSMDSRTAGRYSIDRTRCLDYLLCRGDDEI
STLAREFSLMITGLGKRGSAAEAKGLAESSAYPKNPFTTKYFRPAPIAPS
APSADTS*
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