prot_L-elsbetiae_contig656.15259.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig656.15259.1
Unique Nameprot_L-elsbetiae_contig656.15259.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length314
Homology
BLAST of mRNA_L-elsbetiae_contig656.15259.1 vs. uniprot
Match: A0A6H5L5D8_9PHAE (PHS protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5D8_9PHAE)

HSP 1 Score: 429 bits (1103), Expect = 1.220e-142
Identity = 227/310 (73.23%), Postives = 249/310 (80.32%), Query Frame = 0
Query:    1 LGPGEGAHVLEANAMAMAPSLSFKIAGFDWTPPRQVAVAELNRPTRGSASASVSSTSGVGDAHGGSRNGREDGXXXXXXXXXXXAGNHHRPGISVQSVPCRNMSNQILHLSVEAASVRMNSVLVTVFAGFWVRNLSGLPLTLGEPVPRGLSALELQEERHAE-AARDKTRRYSPSPPRQSLWDVSLSAVQSDRHGLTEEVFEVRITGRGEEGMDRFDTRWITAQGNPSTPYTQVRLPSNTWRWEDDWSIDISGAVAPNAPGTDGGGWESCSCKLRGASYSNSSFSSSRSFTLSDPVWRRRWVRRRTPCQP 309
            L PG+G HVLEAN MAMAPSLS K+AGFDWT P QVAVAEL RPTR  ++ S     G          GRE               + H PGIS+QSVPCRNMSNQIL+LSVEAASVRMNSVLVTV+AGFWVRNLSGLPLTLGEPV RGLS LEL EER A+ AARDKTRRYSPSPPRQS  DV LSAVQSD+HGLTEEVFE+R+  RGEEGMD +DTRWITAQGNP +P TQVRLPS+ WRW+ +W+ID+SGAVAPNAPGTDGGGWESC  KL+GASYSNSSFSSSR+FTLSDPVWRRRWVRRR P +P
Sbjct:  419 LAPGDGVHVLEANTMAMAPSLSLKVAGFDWTSPHQVAVAELMRPTREGSTGS----DGXXXXXXXXXRGRE------LPGGGVSTTSEHVPGISLQSVPCRNMSNQILYLSVEAASVRMNSVLVTVYAGFWVRNLSGLPLTLGEPVSRGLSPLELHEERLADSAARDKTRRYSPSPPRQSSVDVYLSAVQSDQHGLTEEVFELRLARRGEEGMDSYDTRWITAQGNPRSPCTQVRLPSDLWRWDGEWTIDVSGAVAPNAPGTDGGGWESCPRKLKGASYSNSSFSSSRAFTLSDPVWRRRWVRRRVPYRP 718          
BLAST of mRNA_L-elsbetiae_contig656.15259.1 vs. uniprot
Match: D7FMF6_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF6_ECTSI)

HSP 1 Score: 416 bits (1070), Expect = 1.830e-132
Identity = 228/304 (75.00%), Postives = 250/304 (82.24%), Query Frame = 0
Query:    1 LGPGEGAHVLEANAMAMAPSLSFKIAGFDWTPPRQVAVAELNRPTRGSASASVSSTSGVGDAHGGSRNGREDGXXXXXXXXXXXAGNHHRPGISVQSVPCRNMSNQILHLSVEAASVRMNSVLVTVFAGFWVRNLSGLPLTLGEPVPRGLSALELQEERHAE-AARDKTRRYSPSPPRQSLWDVSLSAVQSDRHGLTEEVFEVRITGRGEEGMDRFDTRWITAQGNPSTPYTQVRLPSNTWRWEDDWSIDISGAVAPNAPGTDGGGWESCSCKLRGASYSNSSFSSSRSFTLSDPVWRRRWVRR 303
            L PG+G HVLEANAMAMAPSLSFK+AGFDWTPP QVAVAEL RPTR        ST   G             XXXXXXXXX    + H PGIS+QSVPCRNMSNQIL+LSVEAASVRMNSVLVTVF+GFWVRNLSGLPLTLGEPV RGLS LEL EER A+ AARDK RRYSPSPPRQS WDV LSAVQSD+HG+TEEVFE+R+  RG+EGMD +DTRWITAQGNP +P TQVRLPS+ WRW+ +W++D+SGAVAPNAPGT GGGWESC  KL+GASYSNSSFSSSR+FTLSDPVWRRR  RR
Sbjct:  535 LTPGDGVHVLEANAMAMAPSLSFKVAGFDWTPPHQVAVAELMRPTR------AGSTDSDGXXX---XXXXXXXXXXXXXXXXVPTTSEHVPGISLQSVPCRNMSNQILYLSVEAASVRMNSVLVTVFSGFWVRNLSGLPLTLGEPVSRGLSPLELHEERLADSAARDKMRRYSPSPPRQSSWDVHLSAVQSDQHGMTEEVFELRLARRGQEGMDSYDTRWITAQGNPRSPCTQVRLPSDLWRWDGEWTMDVSGAVAPNAPGTGGGGWESCPRKLKGASYSNSSFSSSRAFTLSDPVWRRRGTRR 829          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig656.15259.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L5D8_9PHAE1.220e-14273.23PHS protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FMF6_ECTSI1.830e-13275.00SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig656contigL-elsbetiae_contig656:26996..31696 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig656.15259.1mRNA_L-elsbetiae_contig656.15259.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig656 26996..31697 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig656.15259.1 ID=prot_L-elsbetiae_contig656.15259.1|Name=mRNA_L-elsbetiae_contig656.15259.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=314bp
LGPGEGAHVLEANAMAMAPSLSFKIAGFDWTPPRQVAVAELNRPTRGSAS
ASVSSTSGVGDAHGGSRNGREDGGGGGGGGGRDAAGNHHRPGISVQSVPC
RNMSNQILHLSVEAASVRMNSVLVTVFAGFWVRNLSGLPLTLGEPVPRGL
SALELQEERHAEAARDKTRRYSPSPPRQSLWDVSLSAVQSDRHGLTEEVF
EVRITGRGEEGMDRFDTRWITAQGNPSTPYTQVRLPSNTWRWEDDWSIDI
SGAVAPNAPGTDGGGWESCSCKLRGASYSNSSFSSSRSFTLSDPVWRRRW
VRRRTPCQPAGPLA
back to top