prot_L-elsbetiae_contig656.15258.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig656.15258.1
Unique Nameprot_L-elsbetiae_contig656.15258.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length333
Homology
BLAST of mRNA_L-elsbetiae_contig656.15258.1 vs. uniprot
Match: A0A6H5L5D8_9PHAE (PHS protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5D8_9PHAE)

HSP 1 Score: 268 bits (686), Expect = 2.460e-80
Identity = 187/368 (50.82%), Postives = 208/368 (56.52%), Query Frame = 0
Query:    1 LSEAGRSFLHCMLAMEGVSVRGGEA----RPRRLSRCDAIWEVCLENGRHMVTLRSALEVVNKCGSCLEVRCSTDSFAGGGGDRGTAAKEEVVGTVAPGGRLPLPLRWSRAEDIRLRP--LLCRQLGVGANRAGSDPAMAMSE--------SGGGSEDSTAAFEFSDCSVLVPAARAGETELGVTMAVIPWVACHPSPHPA---ADRDNAAAXXXXXXPTRPPQPVFLFLEGVDANEPQDR---------GGRTTARDSPASRTSHR---------GRTASSTTLQKHXXXXXXXXXXXXXXXXQPRAEXXXXXXXXXXXSPSMFPFPRGSPRAAASVNPTTMMAALSLRPLEVVVYASLSFRNLLPV 333
            L+E GRSFL CML MEGV  R         PRRLSRCDAIWEVCLENGRH VTLRSALEVVNKCGS LEVRCSTDSFA G GD G  AKEEVVG VAPGGRLPLPLRWSRAEDIRLRP             R+ S    +M +        + G  +    ++E+SDCSVLVPAARAGE ELG T AVIPWVAC+PS   A   AD D  A+           +P+FLFLEG+DAN+P            G R  A  +P SRT  R         GR  +++TL                   +P A                      SPR+A        MAALSLRPLEVVVYASLSFRNLLPV
Sbjct:   73 LTEVGRSFLQCMLVMEGVPGRKAAGDRGQSPRRLSRCDAIWEVCLENGRHTVTLRSALEVVNKCGSWLEVRCSTDSFAAGRGD-GDNAKEEVVGAVAPGGRLPLPLRWSRAEDIRLRPWXXXXXXXXXXXXRSSSPSNTSMPKKVVQIHDLAEGSGDQGERSYEYSDCSVLVPAARAGEGELGATTAVIPWVACNPSQPSANSPADGDTNASR----------KPLFLFLEGLDANDPDGGRHGAAIPGGGSRQNASSNPWSRTRRRSRDGGGRSSGRVVANSTLHGRQRQ-------------RPDAAFPTRVVD--------------SPRSAG-----ISMAALSLRPLEVVVYASLSFRNLLPV 397          
BLAST of mRNA_L-elsbetiae_contig656.15258.1 vs. uniprot
Match: D7FMF6_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF6_ECTSI)

HSP 1 Score: 273 bits (698), Expect = 2.030e-79
Identity = 192/353 (54.39%), Postives = 206/353 (58.36%), Query Frame = 0
Query:    1 LSEAGRSFLHCMLAMEGVSVRGGEA----RPRRLSRCDAIWEVCLENGRHMVTLRSALEVVNKCGSCLEVRCSTDSFAGGGGDRGTAAKEEVVGTVAPGGRLPLPLRWSRAEDIRLRPLLCRQLG-VGANRAGSDPAM------------AMSESGGGSEDSTAAFEFSDCSVLVPAARAGETELGVTMAVIPWVACHPSP---HPAADRDNAAAXXXXXXPTRPPQPVFLFLEGVDANEPQDRGGRTTARDSPASRTSHRGRTASSTTLQKHXXXXXXXXXXXXXXXXQPRAEXXXXXXXXXXXSPSMFPFPRGSPRAAASVNPTTMMAALSLRPLEVVVYASLSFRNLLPV 333
            L+EAGRSFL C+L MEGV  R         PRRLSRCDAIWEVCLENGRH VTLRSALEVVNKCGS LEVRCSTDSFA G GD G  AKEEVVG VAPGGRLPLPLRWSRAEDIRLRP    Q G  G  R  S P+                ESG   E S   +E+SDCSVLVPAARAGE ELG T AVIPWVAC+PS    +  AD D  A            +P+FLFLEG+DAN+P+  GG   A     SR     R ASS    K                                  P+       SPR+A   NP   MAALSLRPLEVVVYASLSFRNLLPV
Sbjct:  189 LTEAGRSFLQCLLVMEGVPGREAAGDRGQSPRRLSRCDAIWEVCLENGRHTVTLRSALEVVNKCGSWLEVRCSTDSFAAGRGD-GDKAKEEVVGAVAPGGRLPLPLRWSRAEDIRLRPWPRSQGGGFGDGRRSSSPSNNSMPKKVVEVHHLAGESGDQGERS---YEYSDCSVLVPAARAGEGELGATTAVIPWVACNPSQPSTNSPADGDTTACR----------KPLFLFLEGLDANDPEG-GGHGAAIPGGGSR-----RKASSDPWSKTRRTSRDGGGRSNSRVVANATLHGRQRQRPDASFPTRVV---DSPRSAG--NP---MAALSLRPLEVVVYASLSFRNLLPV 513          
BLAST of mRNA_L-elsbetiae_contig656.15258.1 vs. uniprot
Match: A0A836C849_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C849_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.580e-7
Identity = 42/106 (39.62%), Postives = 51/106 (48.11%), Query Frame = 0
Query:   33 CDAIWEVCLENGRHMVTLRSALEVVNKCGSCLEVRCSTDSFAGGGGDR--------------------GTAAKEE--VVGTVAPGGRLPLPLRWSRAEDIRLRPLL 116
            C+ IWEV LE+GR ++TLRSA+E+ N     LEV     S  G   D                     G A       V  +APG R  LPLRWS A D+R+RPLL
Sbjct: 3899 CEVIWEVRLESGRRVLTLRSAVELANLTSLPLEVSAQHCSAPGAAADAXXXXXXXXXXXXXXXXXXXXGDAVPPAPPYVAHIAPGERHALPLRWSAANDVRVRPLL 4004          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig656.15258.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L5D8_9PHAE2.460e-8050.82PHS protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FMF6_ECTSI2.030e-7954.39SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A836C849_9STRA1.580e-739.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig656contigL-elsbetiae_contig656:21388..25864 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig656.15258.1mRNA_L-elsbetiae_contig656.15258.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig656 21388..25864 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig656.15258.1 ID=prot_L-elsbetiae_contig656.15258.1|Name=mRNA_L-elsbetiae_contig656.15258.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=333bp
LSEAGRSFLHCMLAMEGVSVRGGEARPRRLSRCDAIWEVCLENGRHMVTL
RSALEVVNKCGSCLEVRCSTDSFAGGGGDRGTAAKEEVVGTVAPGGRLPL
PLRWSRAEDIRLRPLLCRQLGVGANRAGSDPAMAMSESGGGSEDSTAAFE
FSDCSVLVPAARAGETELGVTMAVIPWVACHPSPHPAADRDNAAAAASTA
TPTRPPQPVFLFLEGVDANEPQDRGGRTTARDSPASRTSHRGRTASSTTL
QKHQHQQQQHHHQQQKRLVQPRAEGRSAAAAAAASSPSMFPFPRGSPRAA
ASVNPTTMMAALSLRPLEVVVYASLSFRNLLPV
back to top