prot_L-elsbetiae_contig6106.14658.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6106.14658.1
Unique Nameprot_L-elsbetiae_contig6106.14658.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length290
Homology
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BLAST of mRNA_L-elsbetiae_contig6106.14658.1 vs. uniprot
Match: D7FM67_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM67_ECTSI)

HSP 1 Score: 264 bits (675), Expect = 2.140e-84
Identity = 182/309 (58.90%), Postives = 217/309 (70.23%), Query Frame = 0 
Query:    1 MKDVSASVCFLSLILSCVVLSSNGFITPVSV-TRSRAPGTNKALRESYRS-RVNGRW----------KASMSAARGNLPSSGVSGED-TTRPPSRLSRISGRVRKMIRKAIMGYIPEEEVSYKERAAQQEAAAAKLRGEPEIADERLRGASMAAKAAAIEAVEQSVL------SEEDEDDIL-DSGFVQLNIGNQSPMEAEDKLASLRRRLEQGLPPDTAQEQAEKRRLAMQQQLRLQQQKSSRPPSFDGDTAVAERQPSPLGAPQSNEGTMRPGAPKEAXXXXXXLASAEDVERLNRMFGSMGGEPLR 289
            M  +  S+ F++++++ V    +GF+ PV V TR+R      A    + + RV GR           +ASMSAA   +PS G+SGE+   +   RLSRISGRVRK+IR+A+MGY+PEEEVSYK+RA +QEAAAAKLRGEPEIADERLR AS+AAKAAAIEAVE+S +      +E +EDD L ++ FVQLNIG++SPME EDKLASLR RLEQGLPPDTAQEQAEK                 RPPSFDGDTAVAER  S L A Q+NEG MRP APKEA      +ASAEDVERLNRMFGSMGGEPLR
Sbjct:    1 MAPMKLSISFIAVLIA-VFDGVDGFVGPVPVGTRARVVRRAMATNGFHSTTRVQGRSLPRAQEPLRRQASMSAAPDKMPSPGISGEEGAPQKGGRLSRISGRVRKIIRRAVMGYLPEEEVSYKQRAEEQEAAAAKLRGEPEIADERLRDASIAAKAAAIEAVEESFVQGSFTGNEGEEDDWLANNDFVQLNIGDESPMEIEDKLASLRNRLEQGLPPDTAQEQAEKXXXXXXXXXXXXX--XXRPPSFDGDTAVAERPSSNLDARQANEGGMRPQAPKEAPK----MASAEDVERLNRMFGSMGGEPLR 302
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6106.14658.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM67_ECTSI2.140e-8458.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 201..221
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..21
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..289
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..17
score: 5.0
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..24
score: 0.754
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6106contigL-elsbetiae_contig6106:1016..5818 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6106.14658.1mRNA_L-elsbetiae_contig6106.14658.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6106 918..7053 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6106.14658.1 ID=prot_L-elsbetiae_contig6106.14658.1|Name=mRNA_L-elsbetiae_contig6106.14658.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=290bp
MKDVSASVCFLSLILSCVVLSSNGFITPVSVTRSRAPGTNKALRESYRSR
VNGRWKASMSAARGNLPSSGVSGEDTTRPPSRLSRISGRVRKMIRKAIMG
YIPEEEVSYKERAAQQEAAAAKLRGEPEIADERLRGASMAAKAAAIEAVE
QSVLSEEDEDDILDSGFVQLNIGNQSPMEAEDKLASLRRRLEQGLPPDTA
QEQAEKRRLAMQQQLRLQQQKSSRPPSFDGDTAVAERQPSPLGAPQSNEG
TMRPGAPKEAPKEAPKLASAEDVERLNRMFGSMGGEPLR*
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