prot_L-elsbetiae_contig6104.14656.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6104.14656.1
Unique Nameprot_L-elsbetiae_contig6104.14656.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length380
Homology
BLAST of mRNA_L-elsbetiae_contig6104.14656.1 vs. uniprot
Match: D8LCG9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCG9_ECTSI)

HSP 1 Score: 222 bits (566), Expect = 1.210e-64
Identity = 131/165 (79.39%), Postives = 141/165 (85.45%), Query Frame = 0
Query:    1 RRQVTGTAYIHIDRGRGASADLSLMKLRAAVLGSDALAPAARSASSKDKDAGGKQSXXXXXXXXXXX-GPTVEAAPFQKLFKQKPKRDIRVGTIEKDADFKAFCAALQSPAPPLPSADVQADIKESEGKEDPKPQNALLDFLKERGAKRVRDSQRAAALGPSAHR 164
            R +VTGTAY+HIDR RGA+ADLSL KLRAAV  SDAL PAA  ASS  K+      XXXXXXXX    GPTVEAAPFQKLFKQKPKRD+RVGTIEKDA +KAFCAALQSPA PLPSADVQADI+ESEGKE+PKPQNALLDFL+ERGA+RVRDSQRAAALG SA R
Sbjct:   76 RGRVTGTAYLHIDRERGANADLSLSKLRAAVSASDALTPAAEPASSSSKEGSXXXXXXXXXXXXTATAGPTVEAAPFQKLFKQKPKRDVRVGTIEKDASYKAFCAALQSPAQPLPSADVQADIRESEGKEEPKPQNALLDFLRERGARRVRDSQRAAALGSSASR 240          
BLAST of mRNA_L-elsbetiae_contig6104.14656.1 vs. uniprot
Match: A0A8K1FA17_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FA17_PYTOL)

HSP 1 Score: 74.3 bits (181), Expect = 6.880e-11
Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 0
Query:   71 VEAAPFQKLFKQKPKRDIRVGTIEKDADFKAFCAALQSPAPPLPSADVQADIKESEGKEDPKPQNALLDFLKER 144
            V+ APFQK+ ++K ++D ++GTI++D DF AF   L  P   LPSADV AD KESEG E  KP  AL+ +L ER
Sbjct:  183 VDFAPFQKIPREKARKDTKIGTIDRDPDFLAFLEELAKPNEKLPSADVVADAKESEGAE--KPVAALVQYLNER 254          
BLAST of mRNA_L-elsbetiae_contig6104.14656.1 vs. uniprot
Match: A0A836C7E8_9STRA (Smg4_UPF3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7E8_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.360e-9
Identity = 39/93 (41.94%), Postives = 54/93 (58.06%), Query Frame = 0
Query:   69 PTVEAAPFQKLFKQKPKRDIRVGTIEKDADFKAFCAALQSPAPPLPSADVQADIKESEGKEDPK-----------PQNALLDFLKERGAKRVR 150
            P VE AP+Q++F+ KP+RD   GT E+D D++AFCAAL+ P   LPSADVQ D + +                  P  AL+ +++ER A R R
Sbjct:  163 PLVELAPYQRVFRTKPRRDNLDGTFERDPDYRAFCAALERPVDKLPSADVQLDQRAAXXXXXXXXXXXXXXXXGAPVAALVQYIRERRAARAR 255          
BLAST of mRNA_L-elsbetiae_contig6104.14656.1 vs. uniprot
Match: A0A2D4CDX7_PYTIN (Smg4_UPF3 domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDX7_PYTIN)

HSP 1 Score: 66.2 bits (160), Expect = 2.520e-8
Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 0
Query:   71 VEAAPFQKLFKQKPKRDIRVGTIEKDADFKAFCAALQSPAPPLPSADVQADIKESEGKEDPKPQNALLDFLKER 144
            V+ APFQK+ ++K +RD +VGTIEKD ++ AF   L  PA  LPSAD+  D K+    E  KP  AL+ +L ER
Sbjct:  198 VDFAPFQKIPREKQRRDPKVGTIEKDPEYLAFLEDLAKPAEKLPSADLALDSKDGAAAE--KPVAALVQYLNER 269          
BLAST of mRNA_L-elsbetiae_contig6104.14656.1 vs. uniprot
Match: D0P3T5_PHYIT (Smg4_UPF3 domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0P3T5_PHYIT)

HSP 1 Score: 62.8 bits (151), Expect = 4.130e-7
Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = 0
Query:   71 VEAAPFQKLFKQKPKRDIRVGTIEKDADFKAFCAALQSPAPPLPSADVQADIKESEGKEDPKPQNALLDFLKERGAKRVRDSQRAAALGPSA 162
            VE APFQK+ ++K ++D++VGTI+ D ++ AF   L  P   LPSA+   D+ E E  E  KP  AL+ +L ER +   RD  R  + G SA
Sbjct:  171 VEFAPFQKIPREKQRKDVKVGTIDCDPEYLAFLEELAKPKDKLPSAEALVDMAEGETLE--KPVAALVKYLNERKSHN-RDKCRGKSGGKSA 259          
BLAST of mRNA_L-elsbetiae_contig6104.14656.1 vs. uniprot
Match: A0A3R7HC05_9STRA (Smg4_UPF3 domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HC05_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.420e-7
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 0
Query:   71 VEAAPFQKLFKQKPKRDIRVGTIEKDADFKAFCAALQSPAPPLPSADVQADIKESEGKEDPKPQNALLDFLKERGAK 147
            VE APFQK+ ++K ++D +VGTI++D ++ AF   L  P   LPSA+   D+ E E  E  +P  AL+ +L ER  K
Sbjct:  344 VEFAPFQKIPREKQRKDAKVGTIDRDPEYTAFLEELAKPKDKLPSAEAAVDMAEGESVE--RPVAALVKYLNERKGK 418          
BLAST of mRNA_L-elsbetiae_contig6104.14656.1 vs. uniprot
Match: W2PRS1_PHYPN (Smg4_UPF3 domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2PRS1_PHYPN)

HSP 1 Score: 62.4 bits (150), Expect = 5.450e-7
Identity = 34/74 (45.95%), Postives = 47/74 (63.51%), Query Frame = 0
Query:   71 VEAAPFQKLFKQKPKRDIRVGTIEKDADFKAFCAALQSPAPPLPSADVQADIKESEGKEDPKPQNALLDFLKER 144
            VE APFQK+ ++K ++D +VGTI++D ++ AF   L  P   LPSA+   DI E E  E  KP  AL+ +L ER
Sbjct:  172 VEFAPFQKVPREKQRKDAKVGTIDRDPEYIAFLEELAKPKDKLPSAEALVDIAEGETVE--KPVAALVKYLNER 243          
BLAST of mRNA_L-elsbetiae_contig6104.14656.1 vs. uniprot
Match: A0A484E1H6_BRELC (Smg4_UPF3 domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E1H6_BRELC)

HSP 1 Score: 62.0 bits (149), Expect = 7.110e-7
Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 0
Query:   71 VEAAPFQKLFKQKPKRDIRVGTIEKDADFKAFCAALQSPAPPLPSADVQADIKESEGKEDPKPQNALLDFLKERGA 146
            VE APFQK+ ++K ++D +VGTI++D +F AF   L +     PSA+  AD+ E E  E  KP  AL+ +L ER A
Sbjct:  165 VEFAPFQKIPREKQRKDAKVGTIDRDPEFAAFLEQLATVKDTSPSAEALADLAEGEATE--KPVAALVKYLNERKA 238          
BLAST of mRNA_L-elsbetiae_contig6104.14656.1 vs. uniprot
Match: H3H2I9_PHYRM (Smg4_UPF3 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H2I9_PHYRM)

HSP 1 Score: 61.2 bits (147), Expect = 1.240e-6
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 0
Query:   71 VEAAPFQKLFKQKPKRDIRVGTIEKDADFKAFCAALQSPAPPLPSADVQADIKESEGKEDPKPQNALLDFLKER 144
            VE APFQK+ ++K ++D ++GTI++D ++ AF   L  P   LPSA+   D+ E E  E  KP  AL+ +L ER
Sbjct:  161 VEFAPFQKIPREKQRKDAKMGTIDRDPEYMAFLEELAKPKDKLPSAEAVVDMAEGETVE--KPVAALVKYLNER 232          
BLAST of mRNA_L-elsbetiae_contig6104.14656.1 vs. uniprot
Match: A0A3M6VSA1_9STRA (Smg4_UPF3 domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VSA1_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.640e-6
Identity = 33/74 (44.59%), Postives = 47/74 (63.51%), Query Frame = 0
Query:   71 VEAAPFQKLFKQKPKRDIRVGTIEKDADFKAFCAALQSPAPPLPSADVQADIKESEGKEDPKPQNALLDFLKER 144
            VE APFQK+ ++K ++D +VGTI++D ++ AF   L  P   LPSA+   D+ E E  E  KP  AL+ +L ER
Sbjct:  165 VEFAPFQKIPREKQRKDAKVGTIDRDPEYVAFLNELAKPKDKLPSAEPVVDMAEGETVE--KPVAALVKYLNER 236          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6104.14656.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LCG9_ECTSI1.210e-6479.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8K1FA17_PYTOL6.880e-1152.70Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A836C7E8_9STRA1.360e-941.94Smg4_UPF3 domain-containing protein n=1 Tax=Tribon... [more]
A0A2D4CDX7_PYTIN2.520e-848.65Smg4_UPF3 domain-containing protein n=1 Tax=Pythiu... [more]
D0P3T5_PHYIT4.130e-742.39Smg4_UPF3 domain-containing protein n=2 Tax=Phytop... [more]
A0A3R7HC05_9STRA4.420e-742.86Smg4_UPF3 domain-containing protein n=4 Tax=Phytop... [more]
W2PRS1_PHYPN5.450e-745.95Smg4_UPF3 domain-containing protein n=8 Tax=Phytop... [more]
A0A484E1H6_BRELC7.110e-744.74Smg4_UPF3 domain-containing protein n=1 Tax=Bremia... [more]
H3H2I9_PHYRM1.240e-643.24Smg4_UPF3 domain-containing protein n=1 Tax=Phytop... [more]
A0A3M6VSA1_9STRA1.640e-644.59Smg4_UPF3 domain-containing protein n=2 Tax=Perono... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005120UPF3 domainPFAMPF03467Smg4_UPF3coord: 64..144
e-value: 1.4E-12
score: 47.9
IPR039722Nonsense-mediated mRNA decay protein 3PANTHERPTHR13112UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEINcoord: 61..152

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6104contigL-elsbetiae_contig6104:8899..10927 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6104.14656.1mRNA_L-elsbetiae_contig6104.14656.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6104 8899..10927 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6104.14656.1 ID=prot_L-elsbetiae_contig6104.14656.1|Name=mRNA_L-elsbetiae_contig6104.14656.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=380bp
RRQVTGTAYIHIDRGRGASADLSLMKLRAAVLGSDALAPAARSASSKDKD
AGGKQSGSAGNASGAAGGPTVEAAPFQKLFKQKPKRDIRVGTIEKDADFK
AFCAALQSPAPPLPSADVQADIKESEGKEDPKPQNALLDFLKERGAKRVR
DSQRAAALGPSAHRGGGGGGGGGGGSRRVSKSSGGGAGASSRAAAAAASL
SSGTTPKSGASSSSNASSSSSSSSSSRPSPSPRGGQKAAPTGAGVSVISA
SYRAVLAKAAVTATPIPAKGSSEGPKGRSSSTRSSGGGGSGSSRATGRSE
SSSASTAPMPTPRILSRAKDSKPKPSEVSSSQSSSATSASSSRSGGSGGG
SGDGGRRGGGGGKGRAGGGSSSNSRSTKK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005120UPF3_dom
IPR039722Upf3