prot_L-elsbetiae_contig608.14619.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig608.14619.1
Unique Nameprot_L-elsbetiae_contig608.14619.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length808
Homology
BLAST of mRNA_L-elsbetiae_contig608.14619.1 vs. uniprot
Match: D7FY23_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY23_ECTSI)

HSP 1 Score: 341 bits (874), Expect = 1.640e-100
Identity = 173/282 (61.35%), Postives = 211/282 (74.82%), Query Frame = 0
Query:  386 QEVFRPGASCAVCKGTQQDQDEHFMNLCAACDRCFHTKCLGKKRKKDVARWTCGECLDKNKAVYKSTCSECGLAAGRKCALCSACGGAFHPQCLQPPLQNRPPGSLPAALHGKSTWVCFHCECAIPVKIEEGQDDPDKMAALEWSS-SAFGRKPFQRRLRKFWSKEHARAAAENAELLESRRRTQEEEARREAQEVKTNEVAMQAASLMVPANKAAEALAQALQKRPDGSALLGMHGAMESLVKANGDLCKTLAWERAKVKELRQQVHSLGGKPASSLQAAA 666
            QEV RP ASCA CKG +QDQD++ +  CAACDR FHT+CL KK+ KDV  W C EC DK K+VY+S CSECGLAAGRKCALCSACGGAFHPQCL+PPLQ+RPPGS P ALHGK+TWVCFHCECAIPV +  G+DDPD MAAL+WS+ S FG+  F+ +LR FW  EHARAA  + E +  RR   EEE ++ A++    E A+Q   ++   +   +ALA+A  KRPDGSALL MH A+ +LV+ANG LC+ +AWE+AKVK LR+QV SLGG P    +A A
Sbjct:  356 QEV-RPRASCAKCKGKEQDQDQNLLIFCAACDRGFHTRCLDKKKSKDVVHWVCQECFDKTKSVYESICSECGLAAGRKCALCSACGGAFHPQCLEPPLQHRPPGSTPGALHGKNTWVCFHCECAIPVVVPAGEDDPDAMAALKWSAGSGFGKPAFEGKLRTFWEAEHARAARAHEESMRRRRERLEEE-KKIAEKDAAYEAAVQTGIVVPTKDPPTDALARATLKRPDGSALLLMHEAIGNLVQANGALCQMIAWEKAKVKALREQVRSLGGNPDVRARATA 635          
BLAST of mRNA_L-elsbetiae_contig608.14619.1 vs. uniprot
Match: A0A6H5JE71_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE71_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 8.540e-52
Identity = 100/178 (56.18%), Postives = 116/178 (65.17%), Query Frame = 0
Query:  386 QEVFRPGASCAVCKGTQQDQDEHFMNLCAACDRCFHTKCLGKKRKKDVARWTCGECLDKNKAVYKSTCSECGLAAGRKCALCSACGGAFHPQCLQPPLQNRPPGSLPAALHGKSTWVCFHCECAIPVKIEEGQDDPDKMAALEWSS-SAFGRKPFQRRLRKFWSKEHARAAAENAELL 562
            QEV RP ASCA CKG +QDQD++ +  CAACDR FHT+CL KK+ KDV  W C EC DK KAVY                           +CL+P LQ+RPPGS P ALHGK+TWVCFHCECAIPV +  G+DDPD MAALEWS+ S FG   FQ +LR FW  EHARAA E+ E +
Sbjct:  406 QEV-RPRASCAKCKGKEQDQDQNLLIFCAACDRGFHTRCLNKKKSKDVVHWVCQECFDKTKAVY---------------------------ECLEPALQHRPPGSTPGALHGKNTWVCFHCECAIPVVVPAGEDDPDAMAALEWSAGSGFGAPAFQGKLRAFWEAEHARAAREHEESV 555          
BLAST of mRNA_L-elsbetiae_contig608.14619.1 vs. uniprot
Match: A0A0C3PU61_PHLGI (PHD finger protein 10 n=1 Tax=Phlebiopsis gigantea 11061_1 CR5-6 TaxID=745531 RepID=A0A0C3PU61_PHLGI)

HSP 1 Score: 60.1 bits (144), Expect = 6.030e-6
Identity = 41/129 (31.78%), Postives = 48/129 (37.21%), Query Frame = 0
Query:  390 RPGASCAVCKGTQQDQDE---HFMNLCAACDRCFHTKCLGKKRKKDVAR---WTCGECLDKNKAVYKSTCSECGLAAGR-KCALCSACGGAFHPQCLQPPLQNRPPGSLPAALHGKSTWVCFHCECAIP 511
            R    C+ C G      E     M  CA C R  H  CL    + D  R   W C EC          TC EC    G  +  LC +C   +H  CL PPL+  PPG          TW C  C   +P
Sbjct:  126 RRETECSFCGGDDAKNKEGEPETMVTCADCGRSGHPTCLKLAEQADTLRSYGWQCTEC---------KTCEECQEKDGESRFLLCDSCDRGWHMDCLNPPLEQEPPG----------TWYCPICTQTVP 235          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig608.14619.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FY23_ECTSI1.640e-10061.35PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JE71_9PHAE8.540e-5256.18PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A0C3PU61_PHLGI6.030e-631.78PHD finger protein 10 n=1 Tax=Phlebiopsis gigantea... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 306..326
NoneNo IPR availableCOILSCoilCoilcoord: 551..579
NoneNo IPR availablePANTHERPTHR23261GROUNDHOG-RELATEDcoord: 456..742
NoneNo IPR availablePANTHERPTHR23261:SF22GROUND-LIKE (GRD RELATED)coord: 456..742
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 452..507
e-value: 6.6E-4
score: 29.0
coord: 394..442
e-value: 2.8E-4
score: 30.2
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 446..508
e-value: 6.1E-8
score: 34.6
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 336..445
e-value: 2.9E-7
score: 32.7
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 392..444
score: 9.063
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 386..447
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 451..511

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig608contigL-elsbetiae_contig608:13447..18028 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig608.14619.1mRNA_L-elsbetiae_contig608.14619.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig608 13447..18029 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig608.14619.1 ID=prot_L-elsbetiae_contig608.14619.1|Name=mRNA_L-elsbetiae_contig608.14619.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=808bp
ASVRQGLACRDRHWPLVHRSTPPRHIYAFELLAPNVSTLGKAASLDSFAP
LRPWLPTQQSQPTLAALSISGLASGAAAACFLQAVDEYAHQPLDSWRGAL
SRLEMGRKRKNKGMAAAAPPAADARSPERKPRMDASNGGSGSGSSRKPKL
NGTPTKSPRMEAPVAASPATPSRSINAARAPPTETKTPGKTKPPNAAKLE
ARARPASPDSTHKAKKKKNINKTPTTAPAAHAAANGKKAPTAAFSTSASD
DHGSTSGSGSGNGNGHVGMENGGGGGGGGGRRGRPASNNKSKAGSGAKAG
ATSTGKRKAEVAAAAATAAAAEAESDNDTTDTDAEAATAVQEKKTTKKKE
KKEEKSTAAPAASTAPAASAAPAASAVPAASAPPAQEVFRPGASCAVCKG
TQQDQDEHFMNLCAACDRCFHTKCLGKKRKKDVARWTCGECLDKNKAVYK
STCSECGLAAGRKCALCSACGGAFHPQCLQPPLQNRPPGSLPAALHGKST
WVCFHCECAIPVKIEEGQDDPDKMAALEWSSSAFGRKPFQRRLRKFWSKE
HARAAAENAELLESRRRTQEEEARREAQEVKTNEVAMQAASLMVPANKAA
EALAQALQKRPDGSALLGMHGAMESLVKANGDLCKTLAWERAKVKELRQQ
VHSLGGKPASSLQAAADKATGKRKGGSGGSGGGKAPKKSKKGPGAEGMPP
ATVASGAKLNGSSAGGASSKAEAVGAGGGGGGGGGAAAAAVTAAAGAKRD
KARIKPPAAAAAAAPALAPAPVAVKPKASTKGKGKKGEGAAAAFAEVEEE
EEEGEDSS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD