prot_L-elsbetiae_contig608.14618.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig608.14618.1
Unique Nameprot_L-elsbetiae_contig608.14618.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length265
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig608.14618.1 vs. uniprot
Match: D7FY24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY24_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 3.970e-24
Identity = 69/172 (40.12%), Postives = 78/172 (45.35%), Query Frame = 0 
Query:   29 AVEKSLRAMTRGTRVAETLKADVVISAGGGTCAFQLHVNFSHGHVSEAVARAEGLASGFERCYVLLVRPNTDALRNFQLQLSPACDARPLLVAEEENVVSEIRRVSEGVLRATAKGQRREYYKQASGAERRLHQQLRLDRPHGDALAELLRGLGVRKWQQEAELLLDAFGSI 200
            A+E+ LRA+ RGTRV+ T+KADVVIS GGGTCAFQLH NFSHGHV+EA                                                                                   LHQ+LRLD PH   LAELLRGLGV  W+QEA+LLLDAFGSI
Sbjct:    4 ALERGLRAVARGTRVSGTIKADVVISTGGGTCAFQLHTNFSHGHVAEA-----------------------------------------------------------------------------------LHQKLRLDHPHRGILAELLRGLGVPDWRQEADLLLDAFGSI 92
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig608.14618.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FY24_ECTSI3.970e-2440.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..264
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig608contigL-elsbetiae_contig608:7826..12557 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig608.14618.1mRNA_L-elsbetiae_contig608.14618.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig608 7238..13276 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig608.14618.1 ID=prot_L-elsbetiae_contig608.14618.1|Name=mRNA_L-elsbetiae_contig608.14618.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=265bp
MVTNGTATPCLCLLIACPSSTSHDRPTSAVEKSLRAMTRGTRVAETLKAD
VVISAGGGTCAFQLHVNFSHGHVSEAVARAEGLASGFERCYVLLVRPNTD
ALRNFQLQLSPACDARPLLVAEEENVVSEIRRVSEGVLRATAKGQRREYY
KQASGAERRLHQQLRLDRPHGDALAELLRGLGVRKWQQEAELLLDAFGSI
RGVCLQPLSALLADCPVAGETARLLHAFFNEKPAHPLPCVLCPGAAGGCG
LLPPPPPHSAYRDL*
back to top