prot_L-elsbetiae_contig5732.14125.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5732.14125.1
Unique Nameprot_L-elsbetiae_contig5732.14125.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length646
Homology
BLAST of mRNA_L-elsbetiae_contig5732.14125.1 vs. uniprot
Match: A0A6H5JE04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE04_9PHAE)

HSP 1 Score: 287 bits (734), Expect = 6.130e-82
Identity = 241/574 (41.99%), Postives = 286/574 (49.83%), Query Frame = 0
Query:  102 FGDDYAQPRRQQQP---WHPGRPAXXXXXXXXXXXXXXRFRGEVDPARYAERSQWRDQ--GHDEEDKPAAWERSSERHHYPPAHRAPMRREHPAAAYHRSPGPHSSEWYXXXXXXXXXXXXPAHAAYGGDVGQLRPPPGRGMMPRDAAPGXXXXXXXXXXSDDGYGDEGVPAGXXXXXXXXXXXXXXXXXXXXXXXXXXWTDDAEYTVPPPISIKGEDFEKEVVKAAALLVAEREMRAREGARKQGKRQDW----PDDGEKAPTGXXXXXXXXXXXXXXXXRKGGSKASGRGSSRSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAESRADT--DRHSSNGXXXXXXXXPKGKPKTREESRGRHQQADDRERLXXXXXXXXXXXXE------------------HSSRPCESSKPVGSSAWHRSGGGSPRESGGPWEHSIGDTG-YYVHVGGLSFSTTFTTLAKRFAAFGDVNGFKVIFNRVSCSSAAAPASTGGKRRGSKDEAAKDAAVVTAGSGFAFINFDNERGMEKAVECMDGQELDGHVLKVS 645
            +GD  +  +RQQQ    WH GRP               R+ GE   A YAER  W+DQ  GH E D+ AAWER  +R+ +P A RAPMR++ P  ++HR  GP +SEWY              ++AY  D GQ R P GR MMPR A+ G          SDDGYGD+ VPAG                          WTDDA+YT+PPPISIKGEDFEKEVVKAAALLVAEREM ARE ARKQGK Q+W    P  G + P                   + GS++ G  +                                                           ++R D+  DRH S G         KGK +TREES+G   Q DDR+R                                +     +SS   GSS+W R G  S      PWE+    TG +YVHVGGLSFSTTFTTLAKRFAAFGDVNGFKVIFN+VSCS     A    KR+GSK+E  K AAVVTA SGFAFI+FD ERGMEKAVECMDGQ+LDG++LKV+
Sbjct:  197 YGDGLSHNQRQQQQHQSWHSGRPMPQQSGANVPIAP--RYGGEGGSAHYAERH-WQDQRHGHSEADESAAWERP-DRNQFPAAQRAPMRQQ-PPPSFHRPTGPQTSEWYDDADSQVAH----GNSAYD-DGGQRRGPRGRAMMPRRASAGSVGVPPRS--SDDGYGDDDVPAGAMRRLPPPNSAPHGVPLSGRAAA---WTDDAQYTMPPPISIKGEDFEKEVVKAAALLVAEREM-AREEARKQGK-QNWSGADPTPGYEGPR-------------KSKKARSGSRSMGEETDERKKREPSSRKDENDGDHRPKSK-----------------------------------KTRRDSSGDRHGSVGKRADER---KGKARTREESKG-GPQGDDRDRKREDSSRTSHKDKHRXXXXXXXXXXXXXXXXXNDPDSSKSSPKQGSSSWDRKGFNSS-----PWENQHQATGGFYVHVGGLSFSTTFTTLAKRFAAFGDVNGFKVIFNKVSCS-----AEETSKRKGSKEEVTK-AAVVTASSGFAFISFDKERGMEKAVECMDGQKLDGNILKVT 690          
BLAST of mRNA_L-elsbetiae_contig5732.14125.1 vs. uniprot
Match: D8LJZ2_ECTSI (Polyphosphate kinase 2 family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJZ2_ECTSI)

HSP 1 Score: 221 bits (563), Expect = 5.070e-60
Identity = 198/433 (45.73%), Postives = 222/433 (51.27%), Query Frame = 0
Query:  238 MMPRDAAPGXXXXXXXXXXSDDGYGDEGVPAGXXXXXXXXXXXXXXXXXXXXXXXXXXWTDDAEYTVPPPISIKGEDFEKEVVKAAALLVAEREMRAREGARKQGKRQDW----PDDGEKAPTGXXXXXXXXXXXXXXXXRKGGSKASGRGSSRSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAESRADT--DRHSSNGXXXXXXXXPKGKPKTREESRGRHQQADDRER---------------LXXXXXXXXXXXXEHSSRPCESSKPV---GSSAWHRSGGGSPRESGGPWEHSIGDTG-YYVHVGGLSFSTTFTTLAKRFAAFGDVNGFKVIFNRVSCSSAAAPASTGGKRRGSKDEAAKDAAVVTAGSGFAFINFDNERGMEKAVECMDGQELDGHVLKVS 645
            MMPR A+            +DDGYGD+ VP+G      X                   WTDDAEYT+PPPISIKGEDFEKEVVKAAALLVAEREM ARE ARKQGK QDW    P  G + P                  R GG         R                                                         ++R D+  DRH S G         KGK +TREES+G   Q DDR+R                XXXXXXXXXXXX       +SSK +   GSS W R    S      PWE+    TG +YVHVGGLSFSTTFTTLAKRFAAFGDVNGFKVIFN+VSCS     A    KR+GSK+E  K AAVVTA SGFAFI+FDNERGMEKAVECMDGQ+LDG++LKV+
Sbjct:    1 MMPRRAS--GSSVGVPPRSNDDGYGDDDVPSGAMRRPPXPNSASHGVPLPGRAAA---WTDDAEYTMPPPISIKGEDFEKEVVKAAALLVAEREM-AREEARKQGK-QDWSGVDPTPGHEGPR------------KSKKARSGGRSMGEETDERKKREPSSRKDENDGDHRPRSK------------------------------------KTRRDSSGDRHGSVGKRADER---KGKTRTREESKG-GPQGDDRDRKREXXXXXXXXXXXXXXXXXXXXXXXXXXXRDNDLDSSKSLPKQGSSTWDRKDFNSS-----PWENQHQATGGFYVHVGGLSFSTTFTTLAKRFAAFGDVNGFKVIFNKVSCS-----AEETSKRKGSKEEVTK-AAVVTASSGFAFISFDNERGMEKAVECMDGQKLDGNILKVT 363          
BLAST of mRNA_L-elsbetiae_contig5732.14125.1 vs. uniprot
Match: A0A7G9NYJ9_9BACT (RNA-binding protein n=1 Tax=Planctomycetales bacterium zrk34 TaxID=2723666 RepID=A0A7G9NYJ9_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 6.900e-5
Identity = 35/101 (34.65%), Postives = 49/101 (48.51%), Query Frame = 0
Query:  545 VHVGGLSFSTTFTTLAKRFAAFGDVNGFKVIFNRVSCSSAAAPASTGGKRRGSKDEAAKDAAVVTAGSGFAFINFDNERGMEKAVECMDGQELDGHVLKVS 645
            ++VG LSF+T+   +  +FA FGDV+   VI +R           TG  R                  GFAF+  D + G  KA+E ++GQELDG  L V+
Sbjct:    3 IYVGNLSFNTSSDAIQTKFAEFGDVSEVAVITDRE----------TGQPR------------------GFAFVTMD-DAGAAKAIESLNGQELDGRTLNVN 74          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5732.14125.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JE04_9PHAE6.130e-8241.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJZ2_ECTSI5.070e-6045.73Polyphosphate kinase 2 family protein n=1 Tax=Ecto... [more]
A0A7G9NYJ9_9BACT6.900e-534.65RNA-binding protein n=1 Tax=Planctomycetales bacte... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 544..645
e-value: 4.5E-11
score: 52.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 611..643
e-value: 3.3E-7
score: 30.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 543..645
score: 13.225
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 442..645
e-value: 3.2E-18
score: 68.1
NoneNo IPR availablePANTHERPTHR15481RIBONUCLEIC ACID BINDING PROTEIN S1coord: 345..645
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 523..645

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5732contigL-elsbetiae_contig5732:5938..7875 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5732.14125.1mRNA_L-elsbetiae_contig5732.14125.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5732 5938..7875 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5732.14125.1 ID=prot_L-elsbetiae_contig5732.14125.1|Name=mRNA_L-elsbetiae_contig5732.14125.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=646bp
AGSSAPPLPQGAPVPNTAPSGAPTPAGPARAPYPGEMDRRSAPPNHENNG
ARYPEAAGQVGGGGGGGRENPPPRWERPPAPQQQQGQRVAGHGQPRPPPG
AFGDDYAQPRRQQQPWHPGRPAPQPQGRGPGAAGAGRFRGEVDPARYAER
SQWRDQGHDEEDKPAAWERSSERHHYPPAHRAPMRREHPAAAYHRSPGPH
SSEWYEEAADSRGGGGGPAHAAYGGDVGQLRPPPGRGMMPRDAAPGGSAG
APPPRGSDDGYGDEGVPAGKRRRPPPPGGPARGMLPPGRAAAAAAWTDDA
EYTVPPPISIKGEDFEKEVVKAAALLVAEREMRAREGARKQGKRQDWPDD
GEKAPTGGGDEDEEEEENRKASKRKGGSKASGRGSSRSAGEEGRKQRRKQ
GSSSGRHGSSGAGEYQDKGDGDRPKKKRSRRDGSPPPHGSGGRAESRADT
DRHSSNGGGRRTEEGPKGKPKTREESRGRHQQADDRERLREDSRGRHRDQ
DEHSSRPCESSKPVGSSAWHRSGGGSPRESGGPWEHSIGDTGYYVHVGGL
SFSTTFTTLAKRFAAFGDVNGFKVIFNRVSCSSAAAPASTGGKRRGSKDE
AAKDAAVVTAGSGFAFINFDNERGMEKAVECMDGQELDGHVLKVS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf