prot_L-elsbetiae_contig567.14026.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig567.14026.1
Unique Nameprot_L-elsbetiae_contig567.14026.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length200
Homology
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BLAST of mRNA_L-elsbetiae_contig567.14026.1 vs. uniprot
Match: A0A6H5L3V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3V8_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 9.790e-42
Identity = 96/189 (50.79%), Postives = 120/189 (63.49%), Query Frame = 0 
Query:    3 TVWMGIEVPFWLIFAIGLGLVVLVTXXXXXXXXXXXXXXXXXXXXXXXXKGEAEGETPASDAAREVARRLGV--SVGSGRARRRVPVTVCANEVVLRRSPDGQWVAIDSAIKALTLLNEVASVFLVAWVESDLEESLVTDVALSFGLISPTPPPXXXXXXVKAKHGDQRRPPASAPLEASISGTGIPEH 189
            T WMG++VPFWLI A+GLGLV+LV                         +G+AE E PASDAAR V +RLG+  +V +G +RRRVPVTVC N+VVLR+ PDG WVAI+SA++ L LLNEVASVFLVAWV+SDL+ESLV D+ALS GL  P+              G     P++A    + + TGIPEH
Sbjct:    2 TKWMGLDVPFWLIVAVGLGLVLLVIVQAPSSSNSGSRHPNRSAKNK---RGKAE-EPPASDAARGVGKRLGIGGAVRAGGSRRRVPVTVCVNDVVLRKGPDGDWVAIESAVRVLALLNEVASVFLVAWVQSDLDESLVKDIALSSGLTGPS--------------GRDTSDPSAA---LTANATGIPEH 169
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BLAST of mRNA_L-elsbetiae_contig567.14026.1 vs. uniprot
Match: D8LJE1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE1_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 4.530e-17
Identity = 51/97 (52.58%), Postives = 61/97 (62.89%), Query Frame = 0 
Query:   93 EVVLRRSPDGQWVAIDSAIKALTLLNEVASVFLVAWVESDLEESLVTDVALSFGLISPTPPPXXXXXXVKAKHGDQRRPPASAPLEASISGTGIPEH 189
            +VVLR+  DG WVAI+SA++ L LLNEVASVFLVAWV+SDL+ESLV D+ALS GL  P+               D   P A+    A    TGIPEH
Sbjct:    2 QVVLRKGRDGDWVAIESAVRVLVLLNEVASVFLVAWVQSDLDESLVKDIALSSGLTGPS-------------GRDTSGPSATVAANA----TGIPEH 81
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig567.14026.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L3V8_9PHAE9.790e-4250.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJE1_ECTSI4.530e-1752.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 37..199
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 29..36
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..36
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availableTMHMMTMhelixcoord: 4..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig567contigL-elsbetiae_contig567:17316..23318 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig567.14026.1mRNA_L-elsbetiae_contig567.14026.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig567 17286..24203 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig567.14026.1 ID=prot_L-elsbetiae_contig567.14026.1|Name=mRNA_L-elsbetiae_contig567.14026.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=200bp
MATVWMGIEVPFWLIFAIGLGLVVLVTLQTPSSSSASPGSSSRRANRGNK
GKGEAEGETPASDAAREVARRLGVSVGSGRARRRVPVTVCANEVVLRRSP
DGQWVAIDSAIKALTLLNEVASVFLVAWVESDLEESLVTDVALSFGLISP
TPPPPTSPPPVKAKHGDQRRPPASAPLEASISGTGIPEHVSGCCGCCWP*
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