prot_L-elsbetiae_contig56.13919.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig56.13919.1
Unique Nameprot_L-elsbetiae_contig56.13919.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length194
Homology
BLAST of mRNA_L-elsbetiae_contig56.13919.1 vs. uniprot
Match: A0A6H5JBE3_9PHAE (PSII_Pbs31 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JBE3_9PHAE)

HSP 1 Score: 248 bits (633), Expect = 3.820e-81
Identity = 140/193 (72.54%), Postives = 149/193 (77.20%), Query Frame = 0
Query:    1 MKTACVALAIMGSASAFIAPMSNVRTSSSSSXXXXXXXXXXXXXXXXXXXLFSXXXXXXXXXXXXSAAFADGAKSLATQSRARGIYGGRITALKGAVDKGDTAAVLEEQNVFRLFNSGVYSTDKTKFTEAEALAKSVVQAASAGDAKALKDSYAAYVKYTEKKSGYNGAGDGQGFGSEFDYKNRTPNGTVYQR 193
            MKTACVALA++GS+SAF+ PM+NVRT+SSSS                   LF               AFADGAKS ATQ+RARGIYG RI ALKGAVDKGDTAA+L EQN FRLFNSGVYSTDK KF EAEALAKSVVQAA AGDAKALKDSYAAY+KYTEKKSGYNGAGDGQGFGSEFDYKNRTP GTVYQR
Sbjct:    1 MKTACVALALLGSSSAFVVPMANVRTTSSSSTSLAMSSEPMTRSQALSN-LFGATAAVAAAAAVPGVAFADGAKSPATQARARGIYGNRIAALKGAVDKGDTAAILAEQNCFRLFNSGVYSTDKAKFAEAEALAKSVVQAAGAGDAKALKDSYAAYMKYTEKKSGYNGAGDGQGFGSEFDYKNRTPLGTVYQR 192          
BLAST of mRNA_L-elsbetiae_contig56.13919.1 vs. uniprot
Match: B8CC14_THAPS (PSII_Pbs31 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CC14_THAPS)

HSP 1 Score: 100 bits (250), Expect = 1.930e-23
Identity = 64/128 (50.00%), Postives = 80/128 (62.50%), Query Frame = 0
Query:   66 SAAFADGAKSLATQSRARGIYGGRITALKGAVDKGDTAAVLEEQNVFRLFNSGVYSTDKTKFTEAEALAKSVVQAASAGDAKALKDSYAAYVKYTEKKSGYNGAGDGQGFGSEFDYKNRTPNGTVYQR 193
            S A ADGAKS ATQSRARGIYG RI AL+ AV+ GD  AV  E+N F LFNSG  + DK+K +EA     ++  A  A DA ALK +YA Y    + K        GQG+ +++D+K RT  GT+Y R
Sbjct:   50 SLALADGAKSAATQSRARGIYGQRIAALESAVNAGDFGAVAAEKNAFILFNSGAIA-DKSKKSEAVKQTNAIFAAIRAKDAGALKSAYATYKGANDIKVIVADKESGQGYSNDYDFKARTTLGTIYVR 176          
BLAST of mRNA_L-elsbetiae_contig56.13919.1 vs. uniprot
Match: A0A7S2S7V4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S7V4_9STRA)

HSP 1 Score: 100 bits (248), Expect = 7.630e-23
Identity = 63/135 (46.67%), Postives = 85/135 (62.96%), Query Frame = 0
Query:   66 SAAFADGAKSLATQSRARGIYGGRITALKGAVDKGDTAAVLEEQNVFRLFNSGVYS----TDKTKFTEAEALAKSVVQAASAGDAKALKDSYAAYVKYTEKKSGYNGAGDG--QGFGSEFDYKNRTPN-GTVYQR 193
            SAAFADGA SLAT +RARG+YGGRI AL  +V+KGD  AV  E+N F LFNSGVY+     D+     A A   S+  A S GD   +K +YA ++K  + + GY+G      QG+ +E+D+K + P  G++Y R
Sbjct:   70 SAAFADGAVSLATVARARGLYGGRIAALSDSVNKGDLEAVEAEKNAFILFNSGVYARNGPVDRKNKKVAVAATNSLFDAVSKGDKAGVKSAYAEFMKVADIQPGYSGKDKDFTQGYSTEYDWKYKDPKKGSIYIR 204          
BLAST of mRNA_L-elsbetiae_contig56.13919.1 vs. uniprot
Match: A0A7S2FV99_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FV99_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.320e-20
Identity = 63/137 (45.99%), Postives = 81/137 (59.12%), Query Frame = 0
Query:   66 SAAFADGAKSLATQSRARGIYGGRITALKGAVDKGDTAAVLEEQNVFRLFNSGVYSTDKTKFTEAEALAK--SVVQAASAGDAKALKDSYAAYVK-------YTEKKSGYNGAGDGQGFGSEFDYKNRTPNGTVYQR 193
            SAA ADGA+S++T+ R++GIYG RI AL  AV  GD AAV E++N F LF SG ++T   K    E  A   ++  A S  D  ALK SYA +VK       Y EK   Y      QG+ +E+D+K  TP GT+YQR
Sbjct:   75 SAALADGAQSMSTRQRSKGIYGARIVALDQAVAAGDFAAVEEQKNAFVLFVSGGFTTPSGKVIAKELKADYANIFAAVSNKDQAALKSSYAEFVKKADIRPLYDEKTKAYT-----QGYSTEYDWKAYTPKGTIYQR 206          
BLAST of mRNA_L-elsbetiae_contig56.13919.1 vs. uniprot
Match: A0A7S2IG61_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IG61_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 4.260e-20
Identity = 60/131 (45.80%), Postives = 78/131 (59.54%), Query Frame = 0
Query:   66 SAAFADGAKSLATQSRARGIYGGRITALKGAVDKGDTAAVLEEQNVFRLFNSGVYSTDKTKFTEAEAL--AKSVVQAASAGDAKALKDSYAAYVKYTEKKS-GYNGAGDGQGFGSEFDYKNRTPNGTVYQR 193
            + A ADGA S AT  RARGIYGGRI AL+GAV  GD  AV  E+N F LFNSG Y   K K  +A A+    S+  A  + D+ ALK +Y +Y+   +  +     A  GQG+ S++DY+ RT  G +Y R
Sbjct:   53 AVANADGAVSAATVGRARGIYGGRIAALEGAVASGDFGAVAAEKNAFILFNSGAYPGAKNKANKAAAIEGTNSIFAAIRSKDSAALKSAYKSYIAANDISALPAVDANSGQGYCSDYDYRVRTDAGAIYVR 183          
BLAST of mRNA_L-elsbetiae_contig56.13919.1 vs. uniprot
Match: A0A7S2C001_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C001_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.300e-19
Identity = 75/200 (37.50%), Postives = 107/200 (53.50%), Query Frame = 0
Query:    1 MKTACVALAIMGSASAFIAPMSNVRTSSSSSXXXXXXXXXXXXXXXXXXXLFSXXXXXXXXXXXXSAAFADGAKSLATQSRARGIYGGRITALKGAVDKGDTAAVLEEQNVFRLFNSGVYSTDKTKFTEAEAL----AKSVVQAASAGDAKALKDSYAAYVKYTEKKS-GYNG--AGDGQGFGSEFDYKNRTPNGTVYQR 193
            M++  VALA++ SASAF   +   R++ S S                   +F+             AA ADGA SLAT +R+RGIYG R+  L GAV+KGD  AVL E+N F LFN+   S ++ K  E + +     ++V+ AA+ GD  ALK +YA Y+K     +  Y G  A   QG+ +++D+K RT  GT+Y R
Sbjct:   16 MRSFIVALALLASASAFSPTILRARSTVSMSAENVDRRGMITKTAGVLGGVFAGA----------QAANADGAVSLATMARSRGIYGTRVADLAGAVEKGDFEAVLAEKNAFVLFNN---SNNRPKNKEEKKINAVKQEAVLAAAAKGDKAALKAAYADYIKTASLPNPAYKGRDADYSQGYSNDYDWKARTNRGTIYVR 202          
BLAST of mRNA_L-elsbetiae_contig56.13919.1 vs. uniprot
Match: A0A1E7FAF2_9STRA (Extrinsic protein in photosystem II n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FAF2_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 7.320e-18
Identity = 59/131 (45.04%), Postives = 80/131 (61.07%), Query Frame = 0
Query:   67 AAFADGAKSLATQSRARGIYGGRITALKGAVDKGDTAAVLEEQNVFRLFNSGVYSTDKTKFTEAEAL--AKSVVQAASAGDAKALKDSYAAYVKYTEKKSGYNG--AGDGQGFGSEFDYKNRTPNGTVYQR 193
            AA ADGA S AT  R++  +G RI ALKGAV KGD AAV  E+N F L+NSG Y   K K  + +A+    ++  A  A DAKAL+ +YA Y+K T   S Y    A +GQG+ S++DY+ +T    ++ R
Sbjct:   56 AAVADGAISKATIQRSKFKFGSRIAALKGAVAKGDFAAVAAEKNAFVLYNSGAYPGAKNKEAKKQAIIATNAIFGAIRAKDAKALQTAYAGYIKATNM-SDYEAISAEEGQGYSSDWDYRVKTNQAVLWVR 185          
BLAST of mRNA_L-elsbetiae_contig56.13919.1 vs. uniprot
Match: K0R4S8_THAOC (PSII_Pbs31 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R4S8_THAOC)

HSP 1 Score: 85.5 bits (210), Expect = 8.840e-17
Identity = 57/124 (45.97%), Postives = 70/124 (56.45%), Query Frame = 0
Query:   68 AFADGAKSLATQSRARGIYGGRITALKGAVDKGDTAAVLEEQNVFRLFNSGVYSTDKTKFTEAEALAKSVVQAASAGDAKALKDSYAAYVKYTEKKSGYNGAGDGQGFGSEFDYKNRTPNGTVY 191
            A ADGAKS AT SRARGIYG RI AL+ AV KGD  AV  E+N F L+NSG   T K K   A     ++  A    DA ALK +Y  Y    +          GQG+ +++D+K RT  GT+Y
Sbjct:   53 ALADGAKSAATVSRARGIYGQRIAALEDAVSKGDFGAVAAEKNAFILYNSGAI-TSKDKQAAAVKQTNAIFAAIRGKDAGALKKAYGDYKSAQDIAVIVVDKEKGQGYSNDYDFKTRTNLGTIY 175          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig56.13919.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JBE3_9PHAE3.820e-8172.54PSII_Pbs31 domain-containing protein n=2 Tax=Ectoc... [more]
B8CC14_THAPS1.930e-2350.00PSII_Pbs31 domain-containing protein n=1 Tax=Thala... [more]
A0A7S2S7V4_9STRA7.630e-2346.67Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2FV99_9STRA1.320e-2045.99Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2IG61_9STRA4.260e-2045.80Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2C001_9STRA1.300e-1937.50Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A1E7FAF2_9STRA7.320e-1845.04Extrinsic protein in photosystem II n=1 Tax=Fragil... [more]
K0R4S8_THAOC8.840e-1745.97PSII_Pbs31 domain-containing protein n=1 Tax=Thala... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.120.1740coord: 71..193
e-value: 5.5E-44
score: 151.4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..16
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 17..193
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..16
NoneNo IPR availableTMHMMTMhelixcoord: 47..69
NoneNo IPR availableTMHMMTMhelixcoord: 5..27
IPR040933Photosystem II Psb31 proteinPFAMPF18240PSII_Pbs31coord: 73..163
e-value: 5.3E-36
score: 122.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig56contigL-elsbetiae_contig56:3386..6474 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig56.13919.1mRNA_L-elsbetiae_contig56.13919.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig56 2306..6687 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig56.13919.1 ID=prot_L-elsbetiae_contig56.13919.1|Name=mRNA_L-elsbetiae_contig56.13919.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=194bp
MKTACVALAIMGSASAFIAPMSNVRTSSSSSTSLAMSTNEPMSRSQAIST
LFSGAAAVAAAAAIPSAAFADGAKSLATQSRARGIYGGRITALKGAVDKG
DTAAVLEEQNVFRLFNSGVYSTDKTKFTEAEALAKSVVQAASAGDAKALK
DSYAAYVKYTEKKSGYNGAGDGQGFGSEFDYKNRTPNGTVYQR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR040933PSII_Pbs31