prot_L-elsbetiae_contig524.13356.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig524.13356.1
Unique Nameprot_L-elsbetiae_contig524.13356.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length229
Homology
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BLAST of mRNA_L-elsbetiae_contig524.13356.1 vs. uniprot
Match: A0A6H5KA42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA42_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.030e-19
Identity = 63/102 (61.76%), Postives = 70/102 (68.63%), Query Frame = 0 
Query:   69 GGAAAAVRGTKRPVPLPAAGEKWSTQILEAENELRVLRELKIPRVMKALAAVAQQRRKLESTAASVXXXXXXXXXXXXXXARDAAVALSAELRARREASKQQ 170
            GGAAA  RG KRPV +  AG  W ++I EAE ELR L+E KIPRVMKALA V+QQRRKLESTAAS+              +RDAA AL AELRARRE S QQ
Sbjct: 1598 GGAAATARGAKRPVTV--AGT-WGSRIREAEEELRALQETKIPRVMKALADVSQQRRKLESTAASLAAKSAAASARLAQDSRDAAAALLAELRARREVSTQQ 1696
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BLAST of mRNA_L-elsbetiae_contig524.13356.1 vs. uniprot
Match: D8LJV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJV9_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 8.240e-6
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 0 
Query:   83 PLPAAGEKWSTQILEAENELRVLRELKIPRVMKALAAVAQQRRKLES 129
            P+  AG  W ++I EAE ELR L+E KIPRVMKALA V+QQRRKLE+
Sbjct:  921 PVTVAGT-WGSRIREAEEELRALQETKIPRVMKALADVSQQRRKLET 966
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig524.13356.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KA42_9PHAE1.030e-1961.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJV9_ECTSI8.240e-665.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 166..187
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 16..228
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 10..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..15

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig524contigL-elsbetiae_contig524:27359..28739 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig524.13356.1mRNA_L-elsbetiae_contig524.13356.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig524 27235..28775 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig524.13356.1 ID=prot_L-elsbetiae_contig524.13356.1|Name=mRNA_L-elsbetiae_contig524.13356.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=229bp
MAAAAVALLDSVSNAVGGADTSLRGGSSSSGDAAVASTTGEKTGAAVDPA
SALVVSPPLAGLIAPRETGGAAAAVRGTKRPVPLPAAGEKWSTQILEAEN
ELRVLRELKIPRVMKALAAVAQQRRKLESTAASVAAKSAAASARAADDAR
DAAVALSAELRARREASKQQRQKHKALQQQREKEKEREKKRPRGLVESVA
PALEAEQTPTTAAASAATAAAPPPAPKP*
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