prot_L-elsbetiae_contig521.13311.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig521.13311.1
Unique Name	prot_L-elsbetiae_contig521.13311.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	188

Homology

[Close]

BLAST of mRNA_L-elsbetiae_contig521.13311.1 vs. uniprot
Match: D7FZY4_ECTSI (DNA repair enzyme n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY4_ECTSI)

HSP 1 Score: 254 bits (650), Expect = 4.760e-75
Identity = 136/145 (93.79%), Postives = 139/145 (95.86%), Query Frame = 0

Query:    1 MGIKNLWQLLSPVGRSVSIETLAGKTLAVDVSIWLTQFIKAMRDDDGKVMKNAHIIGTLRRVVKLLFHRIRPVFVFDGGAPALKGRTLAARRKLRSEGTDSSVRKTAQRILASQLKKHKNAMSAAKRASSQAAAVAFNPVYQSSE 145
            MGIKNLWQLLSPVGRSVSIETLAGKTLAVDVSIWLTQFIKAMRDDDGKV+KNAHIIGTLRRVVKLLFHRIRPVFVFDGGAPALK RTLAARRKLRSEGTDSSVRKTAQRILASQLKKHK A+SAAKRASSQAA  AFNPVYQ  +
Sbjct:    1 MGIKNLWQLLSPVGRSVSIETLAGKTLAVDVSIWLTQFIKAMRDDDGKVVKNAHIIGTLRRVVKLLFHRIRPVFVFDGGAPALKARTLAARRKLRSEGTDSSVRKTAQRILASQLKKHKAAISAAKRASSQAAVPAFNPVYQGGD 145

[Close]

BLAST of mRNA_L-elsbetiae_contig521.13311.1 vs. uniprot
Match: A0A6H5KXJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXJ8_9PHAE)

HSP 1 Score: 250 bits (639), Expect = 1.430e-73
Identity = 134/145 (92.41%), Postives = 137/145 (94.48%), Query Frame = 0

Query:    1 MGIKNLWQLLSPVGRSVSIETLAGKTLAVDVSIWLTQFIKAMRDDDGKVMKNAHIIGTLRRVVKLLFHRIRPVFVFDGGAPALKGRTLAARRKLRSEGTDSSVRKTAQRILASQLKKHKNAMSAAKRASSQAAAVAFNPVYQSSE 145
            MGIKNLWQLLSPVGRSVSIETLAGKTLAVDVSIWLTQFIKAMRDDDGKV+KNAHIIGTLRRVVKLLFHRIRPVFVFDGGAPALK RTLAARRKLR EGTD SVRKTAQRILASQLKKHK A+SAAKRASSQAA  AFNPVYQ  +
Sbjct:    1 MGIKNLWQLLSPVGRSVSIETLAGKTLAVDVSIWLTQFIKAMRDDDGKVVKNAHIIGTLRRVVKLLFHRIRPVFVFDGGAPALKARTLAARRKLRLEGTDCSVRKTAQRILASQLKKHKAAISAAKRASSQAAVPAFNPVYQGGD 145

[Close]

BLAST of mRNA_L-elsbetiae_contig521.13311.1 vs. uniprot
Match: A0A836CI30_9STRA (XPG N-terminal domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI30_9STRA)

HSP 1 Score: 166 bits (420), Expect = 1.120e-49
Identity = 84/117 (71.79%), Postives = 99/117 (84.62%), Query Frame = 0

Query:    1 MGIKNLWQLLSPVGRSVSIETLAGKTLAVDVSIWLTQFIKAMRDDDGKVMKNAHIIGTLRRVVKLLFHRIRPVFVFDGGAPALKGRTLAARRKLRSEGTDSSVRKTAQRILASQLKK 117
            MG+ NLW+LLSP GR +SIETL  KTLAVDVSIWL +FIK MR DDG VMKNAHIIGTLRRV+KLL+HRIRPVFVFDGGAP+LK +TL ARR++R +  + +V K AQRIL +QLK+
Sbjct:    1 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMRQDA-EVNVTKQAQRILTAQLKR 116

[Close]

BLAST of mRNA_L-elsbetiae_contig521.13311.1 vs. uniprot
Match: W7TX36_9STRA (Dna repair enzyme n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TX36_9STRA)

HSP 1 Score: 168 bits (425), Expect = 5.660e-45
Identity = 83/117 (70.94%), Postives = 102/117 (87.18%), Query Frame = 0

Query:    1 MGIKNLWQLLSPVGRSVSIETLAGKTLAVDVSIWLTQFIKAMRDDDGKVMKNAHIIGTLRRVVKLLFHRIRPVFVFDGGAPALKGRTLAARRKLRSEGTDSSVRKTAQRILASQLKK 117
            MG+ NLWQLL PVGR V++E+L  KTLA+DVSIWLTQFIKAMRDD+GKV+KNAHIIGT RR+VKLLF+RIRP+FVFDGG P +K RT+ +R++ R E  ++SVRKTAQR+L +QLKK
Sbjct:    1 MGVHNLWQLLLPVGRRVNVESLERKTLAIDVSIWLTQFIKAMRDDEGKVVKNAHIIGTFRRIVKLLFYRIRPIFVFDGGTPEIKRRTVMSRKR-RREDQETSVRKTAQRLLLAQLKK 116

[Close]

BLAST of mRNA_L-elsbetiae_contig521.13311.1 vs. uniprot
Match: A0A7R9YE64_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE64_9STRA)

HSP 1 Score: 161 bits (408), Expect = 6.520e-45
Identity = 80/117 (68.38%), Postives = 98/117 (83.76%), Query Frame = 0

Query:    1 MGIKNLWQLLSPVGRSVSIETLAGKTLAVDVSIWLTQFIKAMRDDDGKVMKNAHIIGTLRRVVKLLFHRIRPVFVFDGGAPALKGRTLAARRKLRSEGTDSSVRKTAQRILASQLKK 117
            MG+  LW+LL PVGR  SIE+L GKTLA+D+SIWLTQF+KAMRDDDG+++KNAH++GTLRR+ KLLFHRIRPV VFDG AP LK RTL  RR +R E  ++SV KTAQR+L +QL+K
Sbjct:    1 MGVHGLWRLLLPVGRRASIESLGGKTLAIDMSIWLTQFVKAMRDDDGRLLKNAHLLGTLRRLCKLLFHRIRPVMVFDGSAPTLKRRTLEKRRAMR-ERQEASVTKTAQRLLLAQLRK 116

[Close]

BLAST of mRNA_L-elsbetiae_contig521.13311.1 vs. uniprot
Match: UPI0010366706 (DNA repair protein UVH3-like isoform X2 n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI0010366706)

HSP 1 Score: 147 bits (371), Expect = 8.740e-42
Identity = 71/116 (61.21%), Postives = 93/116 (80.17%), Query Frame = 0

Query:    1 MGIKNLWQLLSPVGRSVSIETLAGKTLAVDVSIWLTQFIKAMRDDDGKVMKNAHIIGTLRRVVKLLFHRIRPVFVFDGGAPALKGRTLAARRKLRSEGTDSSVRKTAQRILASQLK 116
            MG+  LW+LL+PVGR VS+ETLAGK LA+D SIW+ QF+KAMRDD G+++KNAHI+G  RR+ KLLF R +PVFVFDGG PALK RT+ ARR+ R E   + +RKTA+++L + L+
Sbjct:    1 MGVHGLWELLAPVGRRVSVETLAGKKLAIDASIWMIQFMKAMRDDKGEMVKNAHILGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQR-ENAQAKIRKTAEKLLLNHLR 115

[Close]

BLAST of mRNA_L-elsbetiae_contig521.13311.1 vs. uniprot
Match: A0A4S4CV51_CAMSI (XPGN domain-containing protein n=2 Tax=Camellia sinensis TaxID=4442 RepID=A0A4S4CV51_CAMSI)

HSP 1 Score: 147 bits (371), Expect = 4.720e-41
Identity = 71/116 (61.21%), Postives = 93/116 (80.17%), Query Frame = 0

Query:    1 MGIKNLWQLLSPVGRSVSIETLAGKTLAVDVSIWLTQFIKAMRDDDGKVMKNAHIIGTLRRVVKLLFHRIRPVFVFDGGAPALKGRTLAARRKLRSEGTDSSVRKTAQRILASQLK 116
            MG+  LW+LL+PVGR VS+ETLAGK LA+D SIW+ QF+KAMRDD G+++KNAHI+G  RR+ KLLF R +PVFVFDGG PALK RT+ ARR+ R E   + +RKTA+++L + L+
Sbjct:    1 MGVHGLWELLAPVGRRVSVETLAGKKLAIDASIWMIQFMKAMRDDKGEMVKNAHILGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQR-ENAQAKIRKTAEKLLLNHLR 115

[Close]

BLAST of mRNA_L-elsbetiae_contig521.13311.1 vs. uniprot
Match: A0A6N2MXE2_SALVM (XPGN domain-containing protein n=2 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2MXE2_SALVM)

HSP 1 Score: 147 bits (372), Expect = 4.910e-41
Identity = 71/116 (61.21%), Postives = 94/116 (81.03%), Query Frame = 0

Query:    1 MGIKNLWQLLSPVGRSVSIETLAGKTLAVDVSIWLTQFIKAMRDDDGKVMKNAHIIGTLRRVVKLLFHRIRPVFVFDGGAPALKGRTLAARRKLRSEGTDSSVRKTAQRILASQLK 116
            MG++ LW LL+PVGR VS+ETLAGK LA+D SIWL QF+KAMRDD G++++NAH++G  RR+ KLL+ R +PVFVFDG  PALK RT+ ARR+LR E   + +RKTA+++L +QLK
Sbjct:    1 MGVQGLWDLLAPVGRRVSVETLAGKKLAIDASIWLVQFMKAMRDDKGEMVRNAHLLGFFRRICKLLYLRTKPVFVFDGATPALKRRTVIARRRLR-ENARAKIRKTAEKLLLNQLK 115

[Close]

BLAST of mRNA_L-elsbetiae_contig521.13311.1 vs. uniprot
Match: A0A482SEU7_9ARCH (XPGN domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEU7_9ARCH)

HSP 1 Score: 143 bits (360), Expect = 5.070e-41
Identity = 66/92 (71.74%), Postives = 81/92 (88.04%), Query Frame = 0

Query:    1 MGIKNLWQLLSPVGRSVSIETLAGKTLAVDVSIWLTQFIKAMRDDDGKVMKNAHIIGTLRRVVKLLFHRIRPVFVFDGGAPALKGRTLAARR 92
            MG+K+LWQLL+P+GR VSIETL GK LA+D+SIWLTQFIKAMRD++G ++KNAHIIGTLRR++KLLFH I+PVFVFDG  P LK R + +RR
Sbjct:    1 MGVKDLWQLLAPMGRRVSIETLEGKALAIDMSIWLTQFIKAMRDEEGNMIKNAHIIGTLRRILKLLFHGIKPVFVFDGRTPQLKERVIESRR 92

[Close]

BLAST of mRNA_L-elsbetiae_contig521.13311.1 vs. uniprot
Match: A0A7C9D3X5_OPUST (Crossover junction endodeoxyribonuclease n=2 Tax=Pentapetalae TaxID=1437201 RepID=A0A7C9D3X5_OPUST)

HSP 1 Score: 144 bits (362), Expect = 5.950e-41
Identity = 68/111 (61.26%), Postives = 89/111 (80.18%), Query Frame = 0

Query:    1 MGIKNLWQLLSPVGRSVSIETLAGKTLAVDVSIWLTQFIKAMRDDDGKVMKNAHIIGTLRRVVKLLFHRIRPVFVFDGGAPALKGRTLAARRKLRSEGTDSSVRKTAQRIL 111
            MG+  LW LL+PVGR VS+ETLAGK LA+D SIW+ QF+KAMRD+ G+V++NAH++G  RR+ KLLF R +PVFVFDGG PALK RT+ ARR+ R E   + +RKTA+++L
Sbjct:    1 MGVHGLWDLLAPVGRRVSVETLAGKRLAIDASIWMVQFMKAMRDEKGEVVRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQR-ENAQAKIRKTAEKLL 110

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig521.13311.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig521.13311.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FZY4_ECTSI	4.760e-75	93.79	DNA repair enzyme n=1 Tax=Ectocarpus siliculosus T...	[more]
A0A6H5KXJ8_9PHAE	1.430e-73	92.41	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A836CI30_9STRA	1.120e-49	71.79	XPG N-terminal domain-containing protein (Fragment...	[more]
W7TX36_9STRA	5.660e-45	70.94	Dna repair enzyme n=2 Tax=Nannochloropsis gaditana...	[more]
A0A7R9YE64_9STRA	6.520e-45	68.38	Hypothetical protein (Fragment) n=1 Tax=Pinguiococ...	[more]
UPI0010366706	8.740e-42	61.21	DNA repair protein UVH3-like isoform X2 n=1 Tax=Ca...	[more]
A0A4S4CV51_CAMSI	4.720e-41	61.21	XPGN domain-containing protein n=2 Tax=Camellia si...	[more]
A0A6N2MXE2_SALVM	4.910e-41	61.21	XPGN domain-containing protein n=2 Tax=Salix vimin...	[more]
A0A482SEU7_9ARCH	5.070e-41	71.74	XPGN domain-containing protein n=1 Tax=archaeon Ta...	[more]
A0A7C9D3X5_OPUST	5.950e-41	61.26	Crossover junction endodeoxyribonuclease n=2 Tax=P...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006084	XPG/Rad2 endonuclease	PRINTS	PR00853	XPGRADSUPER	coord: 72..91 score: 51.09 coord: 24..38 score: 51.25
IPR001044	XPG/Rad2 endonuclease, eukaryotes	PRINTS	PR00066	XRODRMPGMNTG	coord: 2..19 score: 44.44 coord: 54..77 score: 58.33 coord: 97..119 score: 26.96
IPR006085	XPG N-terminal	SMART	SM00485	xpgn3	coord: 1..98 e-value: 7.2E-40 score: 148.4
IPR006085	XPG N-terminal	PFAM	PF00752	XPG_N	coord: 1..97 e-value: 2.6E-29 score: 101.7
None	No IPR available	GENE3D	3.40.50.1010		coord: 1..138 e-value: 1.7E-32 score: 114.5
None	No IPR available	PANTHER	PTHR16171:SF7	DNA REPAIR PROTEIN RAD2	coord: 1..142
None	No IPR available	PANTHER	PTHR16171	FAMILY NOT NAMED	coord: 1..142
IPR019974	XPG conserved site	PROSITE	PS00841	XPG_1	coord: 70..84
IPR029060	PIN-like domain superfamily	SUPERFAMILY	88723	PIN domain-like	coord: 2..123

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig521	contig	L-elsbetiae_contig521:25624..29017 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig521.13311.1	mRNA_L-elsbetiae_contig521.13311.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig521 25420..29017 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig521.13311.1 ID=prot_L-elsbetiae_contig521.13311.1|Name=mRNA_L-elsbetiae_contig521.13311.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=188bp
MGIKNLWQLLSPVGRSVSIETLAGKTLAVDVSIWLTQFIKAMRDDDGKVM
KNAHIIGTLRRVVKLLFHRIRPVFVFDGGAPALKGRTLAARRKLRSEGTD
SSVRKTAQRILASQLKKHKNAMSAAKRASSQAAAVAFNPVYQSSEGGIQP
AAAAAAAAATAPTATSEEGGGAGAGAKAGAAEGGSKYN

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006084	XPG/Rad2
IPR001044	XPG/Rad2_eukaryotes
IPR006085	XPG_DNA_repair_N
IPR019974	XPG_CS
IPR029060	PIN-like_dom_sf