prot_L-elsbetiae_contig5207.13302.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig5207.13302.1
Unique Name	prot_L-elsbetiae_contig5207.13302.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	277

Homology

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BLAST of mRNA_L-elsbetiae_contig5207.13302.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 336 bits (862), Expect = 3.510e-114
Identity = 175/219 (79.91%), Postives = 182/219 (83.11%), Query Frame = 0

Query:   61 STQLFXXXXXXXXXXXXXXXXXMTVRSVAPSSS---LKMQSAGSAYVETLPGAPFSDGKIFDPLGLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGLKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 276
            +TQLF                 M VRS AP+SS   LKM SAGS YV TLPGAPF DGKIFDPL LS+GA P DIKKWREAEIKHGRVAMLASLGVLVAE+YHP FMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLK+ Y PGDLGFDPL LKP+ EA L  M+TKELNNGRLAMIGIAGMLVQELINPADILG
Sbjct:    3 ATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKM-SAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220

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BLAST of mRNA_L-elsbetiae_contig5207.13302.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 319 bits (818), Expect = 1.790e-107
Identity = 167/227 (73.57%), Postives = 180/227 (79.30%), Query Frame = 0

Query:   53 SSKMTLGTSTQLFXXXXXXXXXXXXXXXXXMTVRSVAPSSS---LKMQSAGSAYVETLPGAPFSDGKIFDPLGLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGLKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 276
            SS M LGT+  L                  M VRS AP+SS   LKM SAGS YV TLPGAPF DGKIFDPL LS+GA PG+IK WREAEIKHGRVAMLA++GV+VAE+YHP FMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAFIEYNTI  A+  PS VTGEGGL+D YSPGDLGFDPL LKPK +A L  MQTKELNNGRLAMIGIAGMLVQEL+NPADILG
Sbjct:    4 SSNMFLGTAATLIASSTAFVAP--------MAVRSAAPASSASALKM-SAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221

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BLAST of mRNA_L-elsbetiae_contig5207.13302.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 315 bits (808), Expect = 6.570e-106
Identity = 160/196 (81.63%), Postives = 172/196 (87.76%), Query Frame = 0

Query:   83 MTVRSVAPSSS---LKMQSAGSAYVETLPGAPFSDGKIFDPLGLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGLKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADIL 275
            + VRS AP+S+   LKM SAGS YV TLPGAPFSDGKIFDPL LS+GAAPGDIKKWREAEIKHGRVAMLASLG+LVAEEYHP FMG D+IGPA+ HFQEISAQ+PEFW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLK+ Y PGDLGFDPL LKP  EA L  M+TKELNNGRLAMIGIAGML QEL+N  DIL
Sbjct:   25 VAVRSAAPASAASALKM-SAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219

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BLAST of mRNA_L-elsbetiae_contig5207.13302.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 296 bits (757), Expect = 1.410e-98
Identity = 141/161 (87.58%), Postives = 151/161 (93.79%), Query Frame = 0

Query:  116 KIFDPLGLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGLKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 276
            +IFDPLGLS+GAAPGDIKKWREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAF+EYNTIMTAF+TPSAVTGEGGLK+ Y PGDLGFDPL LKP  EA L  M+TKELNNGRLAMIGIAGML QEL+NPADILG
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196

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BLAST of mRNA_L-elsbetiae_contig5207.13302.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 296 bits (759), Expect = 4.530e-96
Identity = 142/161 (88.20%), Postives = 151/161 (93.79%), Query Frame = 0

Query:  116 KIFDPLGLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGLKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 276
            +IFDPLGLS+GAAPGDIKKWREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLK+ Y PGDLGFDPL LKP  EA L  M+TKELNNGRLAMIGIAGML QEL+NPADILG
Sbjct:  232 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392

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BLAST of mRNA_L-elsbetiae_contig5207.13302.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 284 bits (727), Expect = 1.080e-93
Identity = 151/227 (66.52%), Postives = 173/227 (76.21%), Query Frame = 0

Query:   53 SSKMTLGTSTQLFXXXXXXXXXXXXXXXXXMTVRSVAPSSS---LKMQSAGSAYVETLPGAPFSDGKIFDPLGLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGLKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 276
            SS M LGT+  L                  M VRS AP+SS   LKM SAG+ Y+ TLPGA   +GKIFD L L++GA PG+IK WREAEIKHGRVAMLA++GV+VAE+YHPFFMGPDYIGPAVDHFQEI+A++P+FW +SLLGMAFIEYNTI  A+  PS VTGEGGL+D YSPGDLGFDP  +KPK +A L  MQ KELNNGRLAMIGI GMLVQEL+N  DILG
Sbjct:    4 SSNMFLGTAATLIASSAAFVTP--------MAVRSAAPASSASALKM-SAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218

[Close]

BLAST of mRNA_L-elsbetiae_contig5207.13302.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 269 bits (687), Expect = 3.300e-88
Identity = 130/160 (81.25%), Postives = 140/160 (87.50%), Query Frame = 0

Query:  116 KIFDPLGLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGLKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADIL 275
            KIFDPLGL++GA  GDIK WREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISA++PEFW FSLL +A IEYNTI  A+  PS VTGEGGL+D YSPGDLGFDPL LKP  +  L TMQTKELNNGRLAMIGIAG LVQEL+NP +IL
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174

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BLAST of mRNA_L-elsbetiae_contig5207.13302.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 261 bits (667), Expect = 5.770e-85
Identity = 141/196 (71.94%), Postives = 147/196 (75.00%), Query Frame = 0

Query:   83 MTVRSVA--PSSSLKMQSAGSAYVETLPGAPFSDGKIFDPLGLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGLKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 276
            M VRSV   PSS     SAGS YV TLPGAPFSDGKIFDPLGLS+GAAPGDIKKWREAEIKHGRVAMLASLGV+VAE                            FW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLK+ Y PGDLGFDPL LKP  EA L  M+TKELNNGRLAMIGIAGML QEL+NPADILG
Sbjct:   25 MAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192

[Close]

BLAST of mRNA_L-elsbetiae_contig5207.13302.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 258 bits (659), Expect = 1.300e-82
Identity = 123/193 (63.73%), Postives = 150/193 (77.72%), Query Frame = 0

Query:   84 TVRSVAPSSSLKMQSAGSAYVETLPGAPFSDGKIFDPLGLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGLKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 276
            T  S  P+S+    SAGS YV TLPGAPF+DGK++DP+GLS  A P DIKKWREAEIKHGRVAMLAS+GVLVAE +HP F+GPDYIGPA+ HF+EI+A++P+FW  +LL +A++EY  I   F     VTGEGG++  Y PGDLGFDPLGL P+ E +L  M+TKELN+GRLAMIGI GM+VQEL+ P  I G
Sbjct:   79 TTLSARPTSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPIFG 271

[Close]

BLAST of mRNA_L-elsbetiae_contig5207.13302.1 vs. uniprot
Match: A0A6H5JAU1_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU1_9PHAE)

HSP 1 Score: 216 bits (551), Expect = 6.570e-68
Identity = 112/161 (69.57%), Postives = 121/161 (75.16%), Query Frame = 0

Query:  116 KIFDPLGLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGLKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 276
            KI DPLGLS+GAAPGDIKKWRE EIKHGRVAMLASLGV+VAE                            FWVFSLLGMAFIEYNTI+TAF+TPSA+TGEGGLK+ Y PGDLGFDPL LKP   A L  M+TKELNNGRLAMIGIAGM+ QEL+NPADILG
Sbjct:   23 KILDPLGLSDGAAPGDIKKWRETEIKHGRVAMLASLGVIVAE----------------------------FWVFSLLGMAFIEYNTIITAFDTPSALTGEGGLKEDYMPGDLGFDPLNLKPDDVAALDVMKTKELNNGRLAMIGIAGMMAQELVNPADILG 155

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig5207.13302.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig5207.13302.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G7Q6_ECTSI	3.510e-114	79.91	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7S1_ECTSI	1.790e-107	73.57	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7Q9_ECTSI	6.570e-106	81.63	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7S5_ECTSI	1.410e-98	87.58	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5JWB4_9PHAE	4.530e-96	88.20	LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
D7G7S0_ECTSI	1.080e-93	66.52	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7Q7_ECTSI	3.300e-88	81.25	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5K8D0_9PHAE	5.770e-85	71.94	LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A...	[more]
D7G5B4_ECTSI	1.300e-82	63.73	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5JAU1_9PHAE	6.570e-68	69.57	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 88..275 e-value: 2.0E-36 score: 127.5
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 107..267 e-value: 4.7E-37 score: 128.0
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 68..270
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 86..276
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 64..85
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..63
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 114..275
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 68..270

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig5207	contig	L-elsbetiae_contig5207:2361..4401 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig5207.13302.1	mRNA_L-elsbetiae_contig5207.13302.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig5207 2244..4899 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig5207.13302.1 ID=prot_L-elsbetiae_contig5207.13302.1|Name=mRNA_L-elsbetiae_contig5207.13302.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=277bp
MLAYVNSLDSQSSVRCCRNHAAPLSHTPCHSHNHQQPTILFYISSLLSPH
PHSSKMTLGTSTQLFLGTAATLIASSTAFVAPMTVRSVAPSSSLKMQSAG
SAYVETLPGAPFSDGKIFDPLGLSEGAAPGDIKKWREAEIKHGRVAMLAS
LGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYN
TIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGLKPKTEADLVTMQTKEL
NNGRLAMIGIAGMLVQELINPADILG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln