prot_L-elsbetiae_contig5203.13298.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig5203.13298.1
Unique Name	prot_L-elsbetiae_contig5203.13298.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	165

Homology

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BLAST of mRNA_L-elsbetiae_contig5203.13298.1 vs. uniprot
Match: A0A6H5K2L8_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2L8_9PHAE)

HSP 1 Score: 268 bits (684), Expect = 7.580e-90
Identity = 136/161 (84.47%), Postives = 146/161 (90.68%), Query Frame = 0

Query:    4 MRVAAAVALVFLGVADVSAFVSPSAFVRATTSSRVGATATARAAGAMRCRPTMNVVDVGSFAELDKLTSDNKDKLIVVDYSTTWCGPCKMILPKFEKLAEEYADAIFVKVIGDSTNDASQLMKREGVRSVPSFHFWKDGKKVDSVNGANEEALEETLRGFH 164
            MR   A ALV LG+ D  AFVSPSAFVRAT SSR  A+ATARAAGAMR RPTM V+D+GSFAELDKLTSDNKDKL+VVDYSTTWCGPCKMILPKFEKLAE+Y+DA+FVKVIGDSTNDASQLMKREGVRSVPSFHFWKDGKKV+ VNGANEEALE+TLR FH
Sbjct:    4 MRAVVAAALVLLGLVD--AFVSPSAFVRATGSSRACASATARAAGAMRSRPTMKVIDIGSFAELDKLTSDNKDKLVVVDYSTTWCGPCKMILPKFEKLAEQYSDAVFVKVIGDSTNDASQLMKREGVRSVPSFHFWKDGKKVEKVNGANEEALEQTLRDFH 162

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BLAST of mRNA_L-elsbetiae_contig5203.13298.1 vs. uniprot
Match: D7FM89_ECTSI (Flagellar outer arm dynein 14 kDa light chain LC5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM89_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 1.470e-67
Identity = 96/111 (86.49%), Postives = 104/111 (93.69%), Query Frame = 0

Query:   54 PTMNVVDVGSFAELDKLTSDNKDKLIVVDYSTTWCGPCKMILPKFEKLAEEYADAIFVKVIGDSTNDASQLMKREGVRSVPSFHFWKDGKKVDSVNGANEEALEETLRGFH 164
            P   +  +GSFAELDKLTSDNKDKL+VVDYSTTWCGPCKMILPKFEKLAE+Y+DA+FVKVIGDSTNDASQLMKREGVRSVPSFHFWKDGKKV+ VNGANEEALE+TLR FH
Sbjct:   13 PRTTLAAIGSFAELDKLTSDNKDKLVVVDYSTTWCGPCKMILPKFEKLAEQYSDAVFVKVIGDSTNDASQLMKREGVRSVPSFHFWKDGKKVEKVNGANEEALEQTLRDFH 123

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BLAST of mRNA_L-elsbetiae_contig5203.13298.1 vs. uniprot
Match: B8BVB7_THAPS (Thioredoxin f n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BVB7_THAPS)

HSP 1 Score: 155 bits (393), Expect = 8.040e-46
Identity = 69/109 (63.30%), Postives = 90/109 (82.57%), Query Frame = 0

Query:   53 RPTMNVVDVGSFAELDKLTSDNKDKLIVVDYSTTWCGPCKMILPKFEKLAEEYADAIFVKVIGDSTNDASQLMKREGVRSVPSFHFWKDGKKVDSVNGANEEALEETLR 161
            +P M VVDV S AE D   S   DKL+V+DYSTTWCGPCK+I PKF++L+++Y D++F+KVIGD++ DAS+LMKREGVRSVPSFH++K+G KVD VNGAN EA+E  ++
Sbjct:   33 QPLMAVVDVNSEAEFDAKVSGAGDKLVVIDYSTTWCGPCKVIAPKFDELSDQYPDSVFIKVIGDASPDASKLMKREGVRSVPSFHYFKNGSKVDVVNGANAEAIEAAIK 141

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BLAST of mRNA_L-elsbetiae_contig5203.13298.1 vs. uniprot
Match: A0A835ZHZ2_9STRA (Flagellar outer arm dynein 14 kDa light chain LC5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHZ2_9STRA)

HSP 1 Score: 155 bits (391), Expect = 2.010e-45
Identity = 70/108 (64.81%), Postives = 87/108 (80.56%), Query Frame = 0

Query:   56 MNVVDVGSFAELDKLTSDNKDKLIVVDYSTTWCGPCKMILPKFEKLAEEYADAIFVKVIGDSTNDASQLMKREGVRSVPSFHFWKDGKKVDSVNGANEEALEETLRGF 163
            M V++V S   LDK  +     L+VVDYSTTWCGPCK+I PK+E+L+ +Y +A+F+KVIGDS+  A++LMKREGVRSVPSFHFWKDGKKVD VNGAN EALE T+R +
Sbjct:   43 MAVIEVDSEEALDKTIAAAGSGLVVVDYSTTWCGPCKVIFPKYEELSNKYTNAVFLKVIGDSSQAATKLMKREGVRSVPSFHFWKDGKKVDQVNGANSEALETTIRDY 150

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BLAST of mRNA_L-elsbetiae_contig5203.13298.1 vs. uniprot
Match: A0A448ZK24_9STRA (Thioredoxin domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZK24_9STRA)

HSP 1 Score: 152 bits (384), Expect = 2.110e-44
Identity = 68/104 (65.38%), Postives = 85/104 (81.73%), Query Frame = 0

Query:   54 PTMNVVDVGSFAELDKLTSDNKDKLIVVDYSTTWCGPCKMILPKFEKLAEEYADAIFVKVIGDSTNDASQLMKREGVRSVPSFHFWKDGKKVDSVNGANEEALE 157
            P M VVD+   A  DK  S + D L+VVDYSTTWCGPCK+I PKF + +E+Y DA+F+KV+GD++ DAS+LMKREGVRSVPSFH++KDG+KVD VNGAN EA+E
Sbjct:   38 PLMAVVDINGEAAFDKTISSSGDSLVVVDYSTTWCGPCKVIAPKFAEFSEKYPDAVFLKVVGDASPDASKLMKREGVRSVPSFHYFKDGEKVDVVNGANAEAIE 141

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BLAST of mRNA_L-elsbetiae_contig5203.13298.1 vs. uniprot
Match: A0A6S9BEG3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9BEG3_9STRA)

HSP 1 Score: 152 bits (384), Expect = 2.320e-44
Identity = 69/108 (63.89%), Postives = 89/108 (82.41%), Query Frame = 0

Query:   53 RPTMNVVDVGSFAELDKLTSDNKDKLIVVDYSTTWCGPCKMILPKFEKLAEEYADAIFVKVIGDSTNDASQLMKREGVRSVPSFHFWKDGKKVDSVNGANEEALEETL 160
            R +M VVD+ S A+ DK      D L+VVDYSTTWCGPCK+I PKF++L+E+Y+DA+FVKVIGD++ DAS+LMKREGVRSVPSFH++K G+KV+ VNGAN EA+E  +
Sbjct:   40 RLSMAVVDIDSEAKFDKTIESAGDSLVVVDYSTTWCGPCKVIAPKFDELSEQYSDAVFVKVIGDASPDASKLMKREGVRSVPSFHYFKGGEKVEVVNGANAEAIEAAI 147

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BLAST of mRNA_L-elsbetiae_contig5203.13298.1 vs. uniprot
Match: A0A7S1FX09_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FX09_9STRA)

HSP 1 Score: 151 bits (381), Expect = 7.700e-44
Identity = 66/107 (61.68%), Postives = 88/107 (82.24%), Query Frame = 0

Query:   55 TMNVVDVGSFAELDKLTSDNKDKLIVVDYSTTWCGPCKMILPKFEKLAEEYADAIFVKVIGDSTNDASQLMKREGVRSVPSFHFWKDGKKVDSVNGANEEALEETLR 161
            +M VVD+GS A  DK      D L+V+DYSTTWCGPCK+I PK+++L+++Y DA+F+KVIGDS+ DAS+LMKREGVRSVPSFH++K+G KV+ VNGAN EA+E  ++
Sbjct:   47 SMRVVDIGSEAAFDKTIGGAGDALVVIDYSTTWCGPCKVIAPKYDELSDKYPDAVFLKVIGDSSADASKLMKREGVRSVPSFHYYKNGNKVEVVNGANAEAIEAAIK 153

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BLAST of mRNA_L-elsbetiae_contig5203.13298.1 vs. uniprot
Match: A0A7S2KBD8_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KBD8_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.040e-43
Identity = 74/120 (61.67%), Postives = 93/120 (77.50%), Query Frame = 0

Query:   42 ATARAAGAMRCRPTMNVVDVGSFAELDKLTSDNKDKLIVVDYSTTWCGPCKMILPKFEKLAEEYADAIFVKVIGDSTNDASQLMKREGVRSVPSFHFWKDGKKVDSVNGANEEALEETLR 161
            AT+RAA     RP M V DV S +E D       D L+VVDYSTTWCGPCK+I PKF++L++ Y D+IF+KVIGD+T DAS+LMKREGVRSVPSFH++K+G+KVD VNGAN EA+E  ++
Sbjct:   25 ATSRAAP----RPLMAVADVKSESEFDAKIEGAGDALVVVDYSTTWCGPCKVIAPKFDELSDAYPDSIFLKVIGDATPDASKLMKREGVRSVPSFHYFKNGEKVDVVNGANAEAIEGAIK 140

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BLAST of mRNA_L-elsbetiae_contig5203.13298.1 vs. uniprot
Match: B7G0P5_PHATC (Thioredoxin f n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G0P5_PHATC)

HSP 1 Score: 148 bits (374), Expect = 1.530e-42
Identity = 66/103 (64.08%), Postives = 86/103 (83.50%), Query Frame = 0

Query:   58 VVDVGSFAELDKLTSDNKDKLIVVDYSTTWCGPCKMILPKFEKLAEEYADAIFVKVIGDSTNDASQLMKREGVRSVPSFHFWKDGKKVDSVNGANEEALEETL 160
            VVD+GS +  D+  +     L+VVDYSTTWCGPCK+I PKFE+L+E+Y DA+F+KVIGD++ DAS+LMKREGVRSVPSFH++K+G+KVD VNGAN EA+E  +
Sbjct:   65 VVDIGSESAFDQTIASAGGSLVVVDYSTTWCGPCKVIAPKFEELSEKYGDAVFLKVIGDASPDASKLMKREGVRSVPSFHYFKNGEKVDVVNGANAEAIEAAI 167

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BLAST of mRNA_L-elsbetiae_contig5203.13298.1 vs. uniprot
Match: K0R878_THAOC (Thioredoxin domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R878_THAOC)

HSP 1 Score: 150 bits (378), Expect = 1.830e-42
Identity = 65/109 (59.63%), Postives = 87/109 (79.82%), Query Frame = 0

Query:   53 RPTMNVVDVGSFAELDKLTSDNKDKLIVVDYSTTWCGPCKMILPKFEKLAEEYADAIFVKVIGDSTNDASQLMKREGVRSVPSFHFWKDGKKVDSVNGANEEALEETLR 161
            RP   V+D+ S A  D   S   D L+++DYSTTWCGPCK+I PKF++L++ Y D+IF+KVIGD+T DAS+LMKREGVRSVPSFH++K+G+K+D VNGAN EA+E  ++
Sbjct:  117 RPLQAVLDIDSEAAFDDKISSAGDSLVIIDYSTTWCGPCKVIAPKFDELSDSYPDSIFIKVIGDATPDASKLMKREGVRSVPSFHYFKNGEKIDVVNGANAEAIEAAIK 225

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig5203.13298.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig5203.13298.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K2L8_9PHAE	7.580e-90	84.47	Thioredoxin domain-containing protein n=1 Tax=Ecto...	[more]
D7FM89_ECTSI	1.470e-67	86.49	Flagellar outer arm dynein 14 kDa light chain LC5 ...	[more]
B8BVB7_THAPS	8.040e-46	63.30	Thioredoxin f n=1 Tax=Thalassiosira pseudonana Tax...	[more]
A0A835ZHZ2_9STRA	2.010e-45	64.81	Flagellar outer arm dynein 14 kDa light chain LC5 ...	[more]
A0A448ZK24_9STRA	2.110e-44	65.38	Thioredoxin domain-containing protein n=1 Tax=Pseu...	[more]
A0A6S9BEG3_9STRA	2.320e-44	63.89	Hypothetical protein n=1 Tax=Ditylum brightwellii ...	[more]
A0A7S1FX09_9STRA	7.700e-44	61.68	Hypothetical protein n=1 Tax=Corethron hystrix Tax...	[more]
A0A7S2KBD8_9STRA	1.040e-43	61.67	Hypothetical protein n=1 Tax=Skeletonema marinoi T...	[more]
B7G0P5_PHATC	1.530e-42	64.08	Thioredoxin f n=2 Tax=Phaeodactylum tricornutum Ta...	[more]
K0R878_THAOC	1.830e-42	59.63	Thioredoxin domain-containing protein n=1 Tax=Thal...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00421	THIOREDOXIN	coord: 79..87 score: 32.53 coord: 129..140 score: 32.59 coord: 87..96 score: 64.33
None	No IPR available	GENE3D	3.40.30.10		coord: 46..163 e-value: 1.0E-28 score: 101.5
None	No IPR available	PANTHER	PTHR46115:SF1	THIOREDOXIN-LIKE PROTEIN 1	coord: 56..161
None	No IPR available	PANTHER	PTHR46115	FAMILY NOT NAMED	coord: 56..161
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 18..22
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..22
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 23..164
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..5
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 6..17
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..22 score: 0.862
None	No IPR available	TMHMM	TMhelix		coord: 7..29
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 74..160 e-value: 8.1E-21 score: 74.0
IPR013766	Thioredoxin domain	PROSITE	PS51352	THIOREDOXIN_2	coord: 36..164 score: 14.176
IPR017937	Thioredoxin, conserved site	PROSITE	PS00194	THIOREDOXIN_1	coord: 80..98
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 56..161

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig5203	contig	L-elsbetiae_contig5203:3610..10011 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig5203.13298.1	mRNA_L-elsbetiae_contig5203.13298.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig5203 3610..10011 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig5203.13298.1 ID=prot_L-elsbetiae_contig5203.13298.1|Name=mRNA_L-elsbetiae_contig5203.13298.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=165bp
MIGMRVAAAVALVFLGVADVSAFVSPSAFVRATTSSRVGATATARAAGAM
RCRPTMNVVDVGSFAELDKLTSDNKDKLIVVDYSTTWCGPCKMILPKFEK
LAEEYADAIFVKVIGDSTNDASQLMKREGVRSVPSFHFWKDGKKVDSVNG
ANEEALEETLRGFH*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013766	Thioredoxin_domain
IPR017937	Thioredoxin_CS
IPR036249	Thioredoxin-like_sf