prot_L-elsbetiae_contig4788.12647.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig4788.12647.1
Unique Nameprot_L-elsbetiae_contig4788.12647.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length343
Homology
BLAST of mRNA_L-elsbetiae_contig4788.12647.1 vs. uniprot
Match: D7FNZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNZ4_ECTSI)

HSP 1 Score: 407 bits (1046), Expect = 3.590e-138
Identity = 213/320 (66.56%), Postives = 249/320 (77.81%), Query Frame = 0
Query:    1 GTCTCSCVEDWKKFNIVGHASCVPRMAYNTFGYIGLLFTLFHLVHAVYNLRQQRLCETLRSGNGMMVKMLVDEYREQLSMISIVHAPIIGLYFALSLWLPSESVRWSGLALGVSHSISGIGAVLTVQVLIRSVDPRLLKKDAFVLKVSSALTHHVGRSISFSIVSVGAVCLVLLTLFDRTGHGYKITSIAYILVTVTRIVVIVMCSHSMVNVIHKSMKRHAAKQRADGAT------DAGQNGTAKIAADPKLTAAKKTILSALFFCINLTSVASAVLILALVTESGSDNPIVFLATPLAFGPMIALTFHIQLHSKRNKAV 314
            GTCTCSC E+W+ FNIVGHASCVP   +  FG +GL  +L HLVHA YNL+QQR CE ++S  GM V+M VD YREQLSMI+++HA +IGLYFAL LWLP ESVRWS +ALGVSH +SGIGAVLTVQVLIRSVDPRLLK DA +LK S+AL H VGR ++FS VS+GAV L+ LT    TG GYKI +IAYI+VTV RI++IVMCS SM+N+I  SM R  A Q+A GA               KI ADPKL AAK+TILSALFFCI LTS+ASA LI AL TE G+DNPIVFLA PLA+GP+IAL+FH+QLHSKRNKA+
Sbjct:    6 GTCTCSCGENWRAFNIVGHASCVPWAVFEAFGSVGLALSLVHLVHAAYNLKQQRRCEAMQSDRGMAVRMRVDVYREQLSMITVIHALVIGLYFALGLWLPDESVRWSAVALGVSHILSGIGAVLTVQVLIRSVDPRLLKMDAVILKASAALAHPVGRCLTFSSVSIGAVFLIFLTFIAWTGQGYKIAAIAYIVVTVLRILLIVMCSRSMINIIDGSMARDIASQKAQGAQRGRSVLSGDSTSFKKIKADPKLAAAKRTILSALFFCITLTSIASAFLIFALTTEYGTDNPIVFLALPLAYGPLIALSFHVQLHSKRNKAL 325          
BLAST of mRNA_L-elsbetiae_contig4788.12647.1 vs. uniprot
Match: D7FNZ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNZ3_ECTSI)

HSP 1 Score: 401 bits (1031), Expect = 1.190e-135
Identity = 226/347 (65.13%), Postives = 255/347 (73.49%), Query Frame = 0
Query:    1 GTCTCSCV-EDWKKFNIVGHASCVPRMAYNTFGYIGLLFTLFHLVHAVYNLRQQRLCETLRSGNGMMVKMLVDEYREQLSMISIVHAPIIGLYFALSLWLPSESVRWSGLALGVSHSISGIGAVLTVQVLIRSVDPRLLKKDAFVLKVSSALTHHVGRSISFSIVSVGAVCLVLLTLFDRTGHGYKITSIAYILVTVTRIVVIVMCSHSMVNVIHKSMKRHAAKQRADG------ATDAGQNGTAKIAADPKLTAAKKTILSALFFCINLTSVASAVLILALVTESGSDNPIVFLATPLAFGPMIALTFHIQLHSKRNKAVHAQPLSPPNSIGNSNMRSPTSGTSSG 340
            GTCTCSC  E+W+ FNIVG ASCVPR AY TFGY+GL   L HL HAVYNL QQR  E    G  M+VKMLVD YREQLSMISI+HAP+I L+FAL LWLP ESVRWS +ALG S S+SGIGAV TVQVLIRS DPRLLKK A VLKVS+ALTH VGR  SFS VS+GAVCL+ LTL  RTG GYK+ +I+Y+LV    I+V VMCS SM+ +I  S+ + AAKQRA G      A  AG      +  DPKL  AKKTI+SA+FFCI LT +AS VLI AL TE G DNPIVFLATPLAFGP+IAL+FH+QLHSKRNKA      SPP S  NS   S TSG + G
Sbjct:    2 GTCTCSCGGENWRSFNIVGRASCVPRAAYETFGYVGLALALMHLAHAVYNLIQQRRSEAYWGGRRMVVKMLVDVYREQLSMISILHAPVIALFFALVLWLPDESVRWSAVALGASQSLSGIGAVRTVQVLIRSADPRLLKKGATVLKVSAALTHPVGRYTSFSAVSIGAVCLIWLTLMARTGQGYKVAAISYVLVEGLPILVTVMCSRSMIRIIDYSIAQDAAKQRALGDQTTSSACSAGSGHNRTMTVDPKLAGAKKTIISAMFFCITLTGIASTVLIFALTTEYGYDNPIVFLATPLAFGPLIALSFHVQLHSKRNKARRRGQQSPPQSNLNS-FCSSTSGDARG 347          
BLAST of mRNA_L-elsbetiae_contig4788.12647.1 vs. uniprot
Match: A0A6H5KF70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF70_9PHAE)

HSP 1 Score: 360 bits (924), Expect = 2.780e-119
Identity = 197/320 (61.56%), Postives = 230/320 (71.88%), Query Frame = 0
Query:    1 GTCTCSCVEDWKKFNIVGHASCVPRMAYNTFGYIGLLFTLFHLVHAVYNLRQQRLCETLRSGNGMMVKMLVDEYREQLSMISIVHAPIIGLYFALSLWLPSESVRWSGLALGVSHSISGIGAVLTVQVLIRSVDPRLLKKDAFVLKVSSALTHHVGRSISFSIVSVGAVCLVLLTLFDRTGHGYKITSIAYILVTVTRIVVIVMCSHSMVNVIHKSMKRHAAKQRADGATDAGQ------NGTAKIAADPKLTAAKKTILSALFFCINLTSVASAVLILALVTESGSDNPIVFLATPLAFGPMIALTFHIQLHSKRNKAV 314
            GTCTCSC E+W+ FNIVGHASCVP   +  FG  GL F+L HLVHA +NL+QQ       S  GM V+MLVD YREQLSMI+++HAP+IGLYFA  LWLP E VRWS +ALGVSH +SGIGAVLTVQVL                  S+AL H VGR ++F  VS+GAV L+ LTL   TG GYKI +IAYI+VTV RI++IVMCS SM+N+I  SM+R  A QRA  A   G           KI ADPKL AAK+TILSALFFCI LTS+ASAVLI AL TE G++NPIVFLA PLAFGP+IAL+FH+QLHSKRNK +
Sbjct:    6 GTCTCSCGENWRAFNIVGHASCVPCAVFEAFGSGGLAFSLVHLVHAAHNLKQQ---VGDLSERGMAVRMLVDVYREQLSMITVIHAPVIGLYFAFGLWLPDEGVRWSAVALGVSHILSGIGAVLTVQVLXXXXXXXXXXXXXXXXXASAALAHPVGRCLTFFSVSIGAVFLIFLTLIASTGQGYKIAAIAYIVVTVLRILLIVMCSRSMINIIDGSMERDIASQRAQDAHSGGSVLGGDSTSAKKIKADPKLAAAKRTILSALFFCITLTSIASAVLIFALTTEYGNNNPIVFLALPLAFGPLIALSFHVQLHSKRNKVL 322          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4788.12647.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FNZ4_ECTSI3.590e-13866.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FNZ3_ECTSI1.190e-13565.13Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KF70_9PHAE2.780e-11961.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 283..302
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 214..252
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 131..158
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 78..100
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 278..282
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 253..277
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 51..77
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 189..213
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..30
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 31..50
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 159..177
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 303..343
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 101..105
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 106..130
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 178..188
NoneNo IPR availableTMHMMTMhelixcoord: 285..307
NoneNo IPR availableTMHMMTMhelixcoord: 78..100
NoneNo IPR availableTMHMMTMhelixcoord: 253..275
NoneNo IPR availableTMHMMTMhelixcoord: 26..48
NoneNo IPR availableTMHMMTMhelixcoord: 154..176
NoneNo IPR availableTMHMMTMhelixcoord: 191..213
NoneNo IPR availableTMHMMTMhelixcoord: 111..133

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4788contigL-elsbetiae_contig4788:3748..10547 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4788.12647.1mRNA_L-elsbetiae_contig4788.12647.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig4788 3748..10547 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig4788.12647.1 ID=prot_L-elsbetiae_contig4788.12647.1|Name=mRNA_L-elsbetiae_contig4788.12647.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=343bp
GTCTCSCVEDWKKFNIVGHASCVPRMAYNTFGYIGLLFTLFHLVHAVYNL
RQQRLCETLRSGNGMMVKMLVDEYREQLSMISIVHAPIIGLYFALSLWLP
SESVRWSGLALGVSHSISGIGAVLTVQVLIRSVDPRLLKKDAFVLKVSSA
LTHHVGRSISFSIVSVGAVCLVLLTLFDRTGHGYKITSIAYILVTVTRIV
VIVMCSHSMVNVIHKSMKRHAAKQRADGATDAGQNGTAKIAADPKLTAAK
KTILSALFFCINLTSVASAVLILALVTESGSDNPIVFLATPLAFGPMIAL
TFHIQLHSKRNKAVHAQPLSPPNSIGNSNMRSPTSGTSSGGGR
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