prot_L-elsbetiae_contig478.12632.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig478.12632.1
Unique Name	prot_L-elsbetiae_contig478.12632.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	609

Homology

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BLAST of mRNA_L-elsbetiae_contig478.12632.1 vs. uniprot
Match: D8LTF4_ECTSI (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTF4_ECTSI)

HSP 1 Score: 497 bits (1279), Expect = 3.430e-168
Identity = 272/502 (54.18%), Postives = 335/502 (66.73%), Query Frame = 0

Query:  126 ERASNEFELNKNRSPAEWMRVRDTTGTAFLWYTFVLQVASACCSMVFLASREENQLSWKTGCWGRWISLADAENIEFVEFDTYIGWQTYGKGDKMGLLSEVSRRAAAVGGLAGGMHTLIVFVSLTFLFFSLSALWLSHDIVFCLRRGPSEEEQ---EEGGPAKPAKHGNPLGLGRDCHRWMFVMAGFDIFAGLWCFGIGCAGFYLAITGGFTDGLEEMVSAWGEDVSCARVQTSPRYGFYVNAVSVLLLLGGGIISLYKAYASDRDLSEAVEMWENDRAETAEMESRLAMIKKKEDYAAXXXXXXXXXAQAPVTIFKSRRA---APVVADSNVKAGAGADGANSPP-------PLXXXXXVSPQATRSFAA-ADVPKERQDRIDTAAALSPIDLEGNNGKIEGAGSAASVPSQP------SILESPCWQSPEPKQMGNDWDVESGVGAAGADAGTAMPGNTGKGGVDDDLPPPQGWEVRTTPSGEKFWVNILTKNVSWEKPT 607
            E A++EFELN++RSPAEWMRV DTTG AFLWYT +L++ASACCS+V++ S +E+QL WKT CWGRW SL+DAE+++FVEFDT+IGWQ YGK DK+GLLSE+S   A +G LAGGMH L++ ++  F   S SALWLS+    C R+ P+ E +   +EG   KPA   +PL L RDCHRWMFVMA   I AGLWCFG+GC GFY+ I G FTDGL++ +S WGE VSC   QTSPRYGF+ N +S+LL  GGG I LYK Y SDR+LSEAVEMW+NDRAE AEME+RLAMI+KKEDY A         A +PV IFKSR++   AP     +  A +  +G ++ P       PL     VSP ++   A+ A+    R  R+ T AA SP DLE +    +  GS A  P  P      S LES   QSPEP+    D D+E G G+A A              VDDDLPPP GWEVRTTP G+KFWVNI TKNVSW++PT
Sbjct:    4 EAANDEFELNEDRSPAEWMRVGDTTGDAFLWYTVMLEIASACCSIVYITSHDEDQLLWKTDCWGRWTSLSDAEDVQFVEFDTHIGWQQYGKVDKLGLLSELSESTAVMGSLAGGMHGLVIIIACVFXXXSSSALWLSYFDFCCSRQTPTHEGKVGPKEGQKTKPAMRDHPLVLARDCHRWMFVMAASYILAGLWCFGVGCIGFYVVIMGDFTDGLQDTISGWGESVSCTEPQTSPRYGFFANGLSILLFFGGGTIILYKTYVSDRELSEAVEMWKNDRAEMAEMEARLAMIRKKEDYKAQVASAAASAA-SPVPIFKSRKSQNNAPSSFSPSPTAASSRNGYHANPSDLDDMLPLSPPDLVSPPSSAGTASTAEGWDGRHKRMATKAAFSPKDLEHDE---QSVGSTADTPRDPRQSPSLSFLESSLLQSPEPQVSNIDRDLELGSGSAAAP-------------VDDDLPPPPGWEVRTTPMGDKFWVNIATKNVSWDRPT 488

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig478.12632.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig478.12632.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LTF4_ECTSI	3.430e-168	54.18	WW domain-containing protein n=2 Tax=Ectocarpus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001202	WW domain	SMART	SM00456	ww_5	coord: 576..608 e-value: 8.5E-7 score: 38.6
IPR001202	WW domain	PFAM	PF00397	WW	coord: 578..606 e-value: 2.5E-6 score: 27.5
IPR001202	WW domain	PROSITE	PS50020	WW_DOMAIN_2	coord: 575..608 score: 13.437
None	No IPR available	GENE3D	2.20.70.10		coord: 570..608 e-value: 3.8E-8 score: 34.8
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 330..360
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 381..608
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..153
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 154..174
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 302..329
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 175..242
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 243..261
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 361..380
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 262..301
None	No IPR available	TMHMM	TMhelix		coord: 358..380
None	No IPR available	TMHMM	TMhelix		coord: 153..175
None	No IPR available	TMHMM	TMhelix		coord: 239..261
None	No IPR available	TMHMM	TMhelix		coord: 311..333
IPR036020	WW domain superfamily	SUPERFAMILY	51045	WW domain	coord: 573..607

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig478	contig	L-elsbetiae_contig478:15589..20682 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig478.12632.1	mRNA_L-elsbetiae_contig478.12632.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig478 14558..20794 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig478.12632.1 ID=prot_L-elsbetiae_contig478.12632.1|Name=mRNA_L-elsbetiae_contig478.12632.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=609bp
MAATPSPKKGGVAQHGWSLNLDREEAPVQPAAASATYGRRNRNRAASRAT
GLAAGSNSASEKVAGSNGKQNSRYGNMKSKSKHTVATEGGKIVPSPLHAH
FGDDKYDLEAALGTQPPSVTSSSVEERASNEFELNKNRSPAEWMRVRDTT
GTAFLWYTFVLQVASACCSMVFLASREENQLSWKTGCWGRWISLADAENI
EFVEFDTYIGWQTYGKGDKMGLLSEVSRRAAAVGGLAGGMHTLIVFVSLT
FLFFSLSALWLSHDIVFCLRRGPSEEEQEEGGPAKPAKHGNPLGLGRDCH
RWMFVMAGFDIFAGLWCFGIGCAGFYLAITGGFTDGLEEMVSAWGEDVSC
ARVQTSPRYGFYVNAVSVLLLLGGGIISLYKAYASDRDLSEAVEMWENDR
AETAEMESRLAMIKKKEDYAAAVAAAAASAAQAPVTIFKSRRAAPVVADS
NVKAGAGADGANSPPPLSPPPLVSPQATRSFAAADVPKERQDRIDTAAAL
SPIDLEGNNGKIEGAGSAASVPSQPSILESPCWQSPEPKQMGNDWDVESG
VGAAGADAGTAMPGNTGKGGVDDDLPPPQGWEVRTTPSGEKFWVNILTKN
VSWEKPTE*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001202	WW_dom
IPR036020	WW_dom_sf