prot_L-elsbetiae_contig4776.12621.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig4776.12621.1
Unique Name	prot_L-elsbetiae_contig4776.12621.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	654

Homology

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BLAST of mRNA_L-elsbetiae_contig4776.12621.1 vs. uniprot
Match: A0A6H5L195_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L195_9PHAE)

HSP 1 Score: 615 bits (1586), Expect = 4.830e-203
Identity = 477/718 (66.43%), Postives = 513/718 (71.45%), Query Frame = 0

Query:    1 GWVPLGARAAGAGRAEVDGEGALVPEFDARIAARMAQELFSEIAAGKEAGRVSSRAQASLVRANFRSALARSRGAAPPAALSELADRTLASFEEADLELALAAGQVVADKLKIK-PPAAPAAPKKAINARTGKAAKRSPXXXXXXXXXXXXXLPSSSPLGSKNXXXXXXXXXXXXXXXKKASKK-----KDARVVPSTEKATGMKAEKGQEVGQLPAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVKAGPASRAGEMGGFWAASTLLQESLACNYTAGAEIVLERMGKEGHWPRTSSYNTLLWYFRQERDATGALSILQSLRDNENVKPDQLSYTLAIQACVWSGSCVEEAWSVVEEAEAAE---DYSFASKDLLDARLILIQAVGGDVLEGLKEMSGKGITPDETTLLGVIKACAERGDTEGALDILQMMRGASS------------------SSYLCPRPSYRSYFEALTACSRALPTAAADDESVVAGEEETGXXXXXXXAGAARRGDWRASKEVLRMMWEDDAARVAK--------------------------GDVAVPGTWSVDLQEALSLGPSHVTMPAVPDAACYQLAMECCVSGGRNDQALALLAEMEGRGLSPNEAALRALIRGFAR-------GGGGSAA----AERRWKGVENALGVFEELAERFDPPSR 654
            GWVP+GARAAG GRAEVDGEGALVP FDARIAARMAQELFSE+AAGKEAGRVSSRAQASLVRA FRS LA SRGAAPPA+LSELADRTL SF+E DLELAL AGQ+ AD+LKIK P   PA+                 XXXXXXXXXXXXX           XXXXXXXXXXXXXXX           K+ R         G    KG+E    PA      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          + KAGPASRAGEMG FWAASTLLQESLACNYTAGAEIVL  M KEG W  TS+YNTLLWYFRQERDA GALS+LQSLR++ENVKPDQ SYTLAIQACVWSGS VEEAW++VEEA+AA    DYSFASKDLLDARL L+QAVGGDVL GL+EMS +G+T DE+T+LGVI+ACA+RGD  GALDILQMMRGA                    ++ +CPRPSYRSY             AA              XXXXXXX+G   RGDWRA+KEVLRMMWED+AAR                             G +A  GTWS +LQEAL LGPSHVTMPAVPDAACYQLAMECCVSGGRND+ALALL+EMEGRGLSPNEAALRALIRGFA        GGGG AA    AERRW+GVENALGVFEELAERFDPPSR
Sbjct:  141 GWVPVGARAAGTGRAEVDGEGALVPAFDARIAARMAQELFSEMAAGKEAGRVSSRAQASLVRAKFRSTLALSRGAAPPASLSELADRTLTSFDETDLELALQAGQLTADQLKIKNPKTTPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNVRGKERGSADVGKNKTKGREGPSSPAA-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATSGQKEEKVERKAGPASRAGEMGRFWAASTLLQESLACNYTAGAEIVLHTMSKEGLWATTSTYNTLLWYFRQERDAKGALSMLQSLRESENVKPDQSSYTLAIQACVWSGSRVEEAWAIVEEAQAAATGGDYSFASKDLLDARLALVQAVGGDVLHGLREMSERGVTADESTMLGVIEACAQRGDAAGALDILQMMRGAXXXXXXXXXXXXXXXXXXXXATAVCPRPSYRSYL------------AAXXXXXXXXXXXXXXXXXXXXXSGDGVRGDWRAAKEVLRMMWEDEAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGLAWCGTWSTELQEALRLGPSHVTMPAVPDAACYQLAMECCVSGGRNDEALALLSEMEGRGLSPNEAALRALIRGFALEGVVADGGGGGPAAERERAERRWRGVENALGVFEELAERFDPPSR 841

[Close]

BLAST of mRNA_L-elsbetiae_contig4776.12621.1 vs. uniprot
Match: D8LKT0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKT0_ECTSI)

HSP 1 Score: 573 bits (1478), Expect = 5.600e-189
Identity = 425/671 (63.34%), Postives = 459/671 (68.41%), Query Frame = 0

Query:   35 MAQELFSEIAAGKEAG-------------RVSSRAQASLVRANFRSALARSRGAAPPAALSELADRTLASFEEADLELALAAGQVVADKLKIKPPAAPAAPKKAINARTGKAAKRSPXXXXXXXXXXXXXLPSSSPLGSKNXXXXXXXXXXXXXXXKKASKKKDARVVPSTEKATGMKAEKGQEVGQLPAG-----GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVK----AGPASRAGEMGGFWAASTLLQESLACNYTAGAEIVLERMGKEGHWPRTSSYNTLLWYFRQERDATGALSILQSLRDNENVKPDQLSYTLAIQACVWSGSCVEEAWSVVEEAEAAE---DYSFASKDLLDARLILIQAVGGDVLEGLKEMSGKGITPDETTLLGVIKACAERGDTEGALDILQMMRGASS---------------SSYLCPRPSYRSYFEALTACSRALPTAAADDESVVAGEEETGXXXXXXXAGAARRGDWRASKEVLRMMWEDDAARVAKGDVAVPGTWSVDLQEALSLGPSHVTMPAVPDAACYQLAMECCVSGGRNDQALALLAEMEGRGLSPNEAALRALIRGFAR-------GGGGSAA----AERRWKGVENALGVFEELAERFDPPSR 654
            MAQELFSE+AAGKEAG             RVSSRAQASLVRA FRS LARSRGAAPPA+LS+LADRTL SF+E DLELAL AGQ+ AD+LKIK P     P  A             XXXXXXXXXXXXX           XXXXXXXXXXXXXXX                     K  +G+E G    G     G             XXXXXXXXXXXXXXXX XXXXXXXX                       K K    A PASRAGEMG FWAASTLLQESLACNYTAGAEIVL+ M  EG W  TS+YNT LWYFRQERDA GALS+LQSLR++ENVKPDQ SYTLAIQACVWSGS VEEAW++VEEAEA     D SFASKDLLDARL+L+QAVGGDVL+GLKEMS +G+T DE+T+LGVI+ACA+RGD  GALDILQMMRGA                 ++ +CPRPSYRSY  AL                         XXXXXXX+G   RGDWRA+KEVLRMMWED+AAR AKGDVAVPGTWS +LQEALSLGPSHVTMPAVPDAACYQLAMECCVSGGRND+AL LL+EMEGRGLSPNEAALRALIRGFA        GGGG AA    AERRW+GVENALGVFEELAERFDPPSR
Sbjct:    1 MAQELFSEMAAGKEAGSRQPTSPRRFAPVRVSSRAQASLVRAKFRSTLARSRGAAPPASLSDLADRTLTSFDETDLELALQAGQLTADQLKIKNPTT--TPASASTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNARGKERGSADVGKNKTKGGRGQPSPAAAKGGXXXXXXXXXXXXXXXXTXXXXXXXXASGKEKLQRGGSGDAETATGGQKKEKVERKAAPASRAGEMGRFWAASTLLQESLACNYTAGAEIVLDTMSNEGLWATTSTYNTFLWYFRQERDAKGALSMLQSLRESENVKPDQSSYTLAIQACVWSGSRVEEAWAIVEEAEAVATGGDSSFASKDLLDARLVLVQAVGGDVLQGLKEMSERGVTADESTMLGVIEACAQRGDAAGALDILQMMRGAXXXXXXXXXXXXXXXXXTTAVCPRPSYRSYLAALXXXXXXXXXX---------------XXXXXXXSGDGVRGDWRAAKEVLRMMWEDEAARAAKGDVAVPGTWSTELQEALSLGPSHVTMPAVPDAACYQLAMECCVSGGRNDEALGLLSEMEGRGLSPNEAALRALIRGFALEGVVADGGGGGPAADRERAERRWRGVENALGVFEELAERFDPPSR 654

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig4776.12621.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig4776.12621.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5L195_9PHAE	4.830e-203	66.43	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
D8LKT0_ECTSI	5.600e-189	63.34	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 579..604 e-value: 1.3 score: 9.4 coord: 438..460 e-value: 0.24 score: 11.7
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 324..358 score: 5.788
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 572..606 score: 9.865
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 360..391 score: 6.621
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 431..465 score: 7.585
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10		coord: 289..397 e-value: 1.7E-10 score: 42.9 coord: 401..493 e-value: 3.7E-7 score: 32.0
None	No IPR available	PANTHER	PTHR46128	FAMILY NOT NAMED	coord: 294..462 coord: 569..622

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig4776	contig	L-elsbetiae_contig4776:5627..13501 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig4776.12621.1	mRNA_L-elsbetiae_contig4776.12621.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig4776 5627..13501 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig4776.12621.1 ID=prot_L-elsbetiae_contig4776.12621.1|Name=mRNA_L-elsbetiae_contig4776.12621.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=654bp
GWVPLGARAAGAGRAEVDGEGALVPEFDARIAARMAQELFSEIAAGKEAG
RVSSRAQASLVRANFRSALARSRGAAPPAALSELADRTLASFEEADLELA
LAAGQVVADKLKIKPPAAPAAPKKAINARTGKAAKRSPPSSSSSSSSSSS
QLPSSSPLGSKNSNNAGAAGAGAGAASKKASKKKDARVVPSTEKATGMKA
EKGQEVGQLPAGGGGGGGGGGGKNNAKSGADTDRARPTPAADKTREKTKG
QKSGGGGDGSNAKKAQDQKRKGQGKVKAGPASRAGEMGGFWAASTLLQES
LACNYTAGAEIVLERMGKEGHWPRTSSYNTLLWYFRQERDATGALSILQS
LRDNENVKPDQLSYTLAIQACVWSGSCVEEAWSVVEEAEAAEDYSFASKD
LLDARLILIQAVGGDVLEGLKEMSGKGITPDETTLLGVIKACAERGDTEG
ALDILQMMRGASSSSYLCPRPSYRSYFEALTACSRALPTAAADDESVVAG
EEETGAAAAGAGAGAARRGDWRASKEVLRMMWEDDAARVAKGDVAVPGTW
SVDLQEALSLGPSHVTMPAVPDAACYQLAMECCVSGGRNDQALALLAEME
GRGLSPNEAALRALIRGFARGGGGSAAAERRWKGVENALGVFEELAERFD
PPSR

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf