prot_L-elsbetiae_contig4766.12605.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig4766.12605.1
Unique Name	prot_L-elsbetiae_contig4766.12605.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	299

Homology

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BLAST of mRNA_L-elsbetiae_contig4766.12605.1 vs. uniprot
Match: A0A6H5KCR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR7_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 3.430e-51
Identity = 137/279 (49.10%), Postives = 168/279 (60.22%), Query Frame = 0

Query:   31 RSRLFELNLLFMRDLSMKVIRRYRLHHDHCQDQADRFFARAADIAAQPPVPL---------AALPAEPPAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAREDWEEDLRQHREAAQQAQEAADQCSMKIIELFFTMAAGSASCGIKSANAVARVIVSQAIGNQDIHAQRLASPPYAGNLFAAYADNCAPVSGYTRHHYMETHDDGSGDDVGDGGAEDLMRLLHLLAPEAIKGMDDNTLNIHLSSLCNSLTDAATDAIKLL--VGRKA-PAGNDAG 297
            R  L E NL  +R LS KV+    LHH+ C+ QA +F++ A D+AA PP P           A  A   ++ XXXXXXXXXXXXXXXX               AREDWEE++RQ+REA  QAQE AD  S  I  + + MA GSASC +K+ANAVAR I  QA+  +D HA  L   P+A +LF AYA+NCAPVSG+ R +        S D  G GG +DL+      AP AIK MDDN LN+HLSSLCNSLTDA  D ++ L  +GR+A  A N AG
Sbjct:  101 RGGLLEQNLALLRGLSAKVMSTLTLHHEECERQAYQFYSTAQDLAASPPEPFPPAGSTPTEGAAAAAEGSQEXXXXXXXXXXXXXXXXVEDGGDEARREAAECAREDWEEEVRQYREAGNQAQETADSVSAMITNILYYMATGSASCDLKTANAVARGIRKQAVEMRDGHALELLKAPFAVSLFRAYAENCAPVSGFLRCYPSSPF---SADVGGVGGTDDLLAXXXXXAPAAIKAMDDNILNVHLSSLCNSLTDAVGDVVQKLDSLGREALKAANGAG 376

[Close]

BLAST of mRNA_L-elsbetiae_contig4766.12605.1 vs. uniprot
Match: D7FK76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK76_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 1.350e-11
Identity = 75/146 (51.37%), Postives = 88/146 (60.27%), Query Frame = 0

Query:   31 RSRLFELNLLFMRDLSMKVIRRYRLHHDHCQDQADRFFARAADIAAQPPVPL----------AALPAEPPAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAREDWEEDLRQHREAAQQAQEAADQCSMKIIELFFTMAAGSA 166
            R  L E NL F+R LS KVI     HH+ C+ QA +F++ A D+AA PP P           A   AE    XXXXXXXXXXXXXXXXXXXXXXX         AREDWEE++RQ+REA  QAQE A+  S  I  + + MA GSA
Sbjct:  104 RGGLLEQNLAFLRGLSAKVISTLTRHHEDCERQAYQFYSTAQDLAASPPEPFPPVGSTPTEGAPAAAEGSQXXXXXXXXXXXXXXXXXXXXXXXXEARREAAECAREDWEEEVRQYREAGNQAQETAESVSAMITNILYYMATGSA 249

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig4766.12605.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig4766.12605.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5KCR7_9PHAE	3.430e-51	49.10	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FK76_ECTSI	1.350e-11	51.37	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 126..153

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig4766	contig	L-elsbetiae_contig4766:7605..12990 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig4766.12605.1	mRNA_L-elsbetiae_contig4766.12605.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig4766 7605..12992 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig4766.12605.1 ID=prot_L-elsbetiae_contig4766.12605.1|Name=mRNA_L-elsbetiae_contig4766.12605.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=299bp
VGAATAGAGTGAGASTCGGGGGGGGRGKASRSRLFELNLLFMRDLSMKVI
RRYRLHHDHCQDQADRFFARAADIAAQPPVPLAALPAEPPAEPPAAAGGG
EGGEGAVAAGDDEAASRREEEDDLAREDWEEDLRQHREAAQQAQEAADQC
SMKIIELFFTMAAGSASCGIKSANAVARVIVSQAIGNQDIHAQRLASPPY
AGNLFAAYADNCAPVSGYTRHHYMETHDDGSGDDVGDGGAEDLMRLLHLL
APEAIKGMDDNTLNIHLSSLCNSLTDAATDAIKLLVGRKAPAGNDAGGA