prot_L-elsbetiae_contig2004.6024.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig2004.6024.1
Unique Nameprot_L-elsbetiae_contig2004.6024.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length969
Homology
BLAST of mRNA_L-elsbetiae_contig2004.6024.1 vs. uniprot
Match: D7FW61_ECTSI (Conserved oligomeric Golgi complex subunit 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW61_ECTSI)

HSP 1 Score: 1346 bits (3483), Expect = 0.000e+0
Identity = 732/972 (75.31%), Postives = 816/972 (83.95%), Query Frame = 0
Query:    3 DSSDNDLVSNPPAKNISEVIQLMLHAPAAMWAALDSNRVLEAANLVQRCRNGWADLSSSFSTGVDSSVAAFLRSHATYVEQFPHRIVLAGTRLLTHSTSTQETAGALTALLQLQAPRDAKPLRCLLELLLRRRGGSVVAMLARATKADDANMLEEVLQTAVTTVQRTIVDVHAIFAPRLSGSCLLEELAHPSCCSQASFRLPSLEAKSLCTTWLSILAPKIRVFSERLLRATGDTNTLSRIRGALWEATHGEGAWAISAPGTRAVVRDKAAEQALWAEAVLFAVDVSAIGGGTPGS----GHGASCMQLDLWSLLFSQIFADLAEALLKESLVCIRKDVECRLDSILLAVTGNETRQSAQEGNNGFASHRLQQPHALMAHDILAAADTVVSLLASEIRDLAGDAWCLTERGDKTAADALKTSFYLLCVDMAAGLANHLRVALQEIHACIKAAAKQERRCLPYGSGIGDLEDAVGSFADAGLVIGRVAWMLNSQSGRPLHSALTPPGCFAERLRGRIEEQQLEAAFVIADTNGDGVVDAEEAAEALQAVSFGASAALVLDPSPYTSFTLSEFSLFATRLLEEQRPRQYLTSCLDSLLAESLNVWAEWALEKTAALLTEGCNALSTLCSNPGLTDDMWRQAHGIWQDKTIELDRDDGDGIQETMHFPIMVSPAILCYIEGVAAELGRILSTADLADPASGEAQGAVESQSS--TGGEPGMRG-STAGKATSKGAARYARSLAAVRASSDLRHALVGLCEGSQSTAAHACEAAQLQLLLDALFLQRWVLDSQTSSSSMESVVSTLCDLVDPINLQIYMPHLQEAASACWAACHTSLSLIFEQVSPGGTA-SSVAMSPDGAVGSTSSFLALAPKARRFEILPLPLDVVRLQHPNGVSRPRNSAGHKSGS-VGGDESGASAQARGLEAGRQALAGLMGQXXXXXXVLSAQNVNVQSVFGAASLFLGGRNRRGDGDEG 965
            D S  D+  +  A+++ EV+QLMLHAPAAMWAALDSN+VLEAANLV RCR+ W DLSS+FSTGVDS VAAFLR H TYVEQFP RI+ AGTRLLT S +TQETAGALTA+LQLQA  DA PLRCLLELLL RRGG+VVAML RATK ++++ +E+VL  AVTTVQRTIVDVHAIFAP  +GSC+LE+LAHPSC SQAS RL + +AK +CTTWLS+L PKIRVF ERLLRATGDTN+L+RIRG+LW+ THG+GAWA  A GTRA    +A +  +W EA  FAVDVSA  GGT GS    G   S  QLDLWSLLFSQIFADLAEALLK+SL  IR+DVECRLDSILLA+T NET Q  QE  +   SHR +QPHALMAHDILAAAD VVSLL SEIR+LAGDA CLTERGD+TAADALKTSFYLL VDMAAGLANHLR+ALQEIHACIK+AA+QERRC+PYG  IGDLE+AV SFADAGL+IGRVAWMLN +SG PL  ALTPP CFA+R RGRIEEQQLEAAFVIADTNGDGVVD EEAAEALQAVSFGASAAL +DPS Y SFTL+EF LFATRLLEEQRPRQ+LTSCLD+LL+ESL VW+EWALEK+AALLTEGCNA+  LC+NPG+T+D+WRQAHGIW+DKTIELDRDDGDGIQET+HFPIMVSPAILCYIEGVAAEL RILSTADL + A  E+    ++Q +  +G E    G S  GKAT +GAARYARSLAAVRASSDL HALVGLCEG+ S AA ACEAAQLQLLLDALFLQ+WV DS  SS SMESVV+TLCDLVDPINLQIYMPHLQ AASACWAACHT LSLIFEQ  P  +A SS ++SPDGA+GS+SSF+ LAPK RRFEILPL L+VVRLQHPNG SR RNS G KSG+   GD  GASAQARGLEAGRQALAGL         VLSAQN +VQSVFGAASLFLGGRNRRG+  +G
Sbjct:   90 DLSGTDVREDAAARHVMEVVQLMLHAPAAMWAALDSNKVLEAANLVLRCRSSWTDLSSTFSTGVDSGVAAFLRGHVTYVEQFPRRILSAGTRLLTRSCNTQETAGALTAILQLQALEDANPLRCLLELLLLRRGGAVVAMLTRATKEENSSDIEQVLHAAVTTVQRTIVDVHAIFAPGRNGSCMLEDLAHPSCRSQASLRLSAHDAKDMCTTWLSVLTPKIRVFGERLLRATGDTNSLARIRGSLWKVTHGDGAWATPAAGTRAGGSIRAVQGLMWMEATSFAVDVSAWDGGTNGSTRAWGQDVSSPQLDLWSLLFSQIFADLAEALLKDSLASIRRDVECRLDSILLAITRNETGQGVQEARSFSGSHRQEQPHALMAHDILAAADAVVSLLTSEIRNLAGDATCLTERGDQTAADALKTSFYLLSVDMAAGLANHLRIALQEIHACIKSAAEQERRCVPYGGRIGDLENAVSSFADAGLLIGRVAWMLNGRSGGPLQYALTPPACFAQRRRGRIEEQQLEAAFVIADTNGDGVVDTEEAAEALQAVSFGASAALAVDPSRYASFTLNEFFLFATRLLEEQRPRQHLTSCLDTLLSESLAVWSEWALEKSAALLTEGCNAMVILCANPGMTNDLWRQAHGIWEDKTIELDRDDGDGIQETVHFPIMVSPAILCYIEGVAAELSRILSTADLTERAVTESCSGWKTQDAQPSGDEERALGWSAPGKATGQGAARYARSLAAVRASSDLSHALVGLCEGAHSAAAQACEAAQLQLLLDALFLQKWVSDSPKSSPSMESVVTTLCDLVDPINLQIYMPHLQTAASACWAACHTPLSLIFEQAIPSSSAPSSASVSPDGALGSSSSFIPLAPKVRRFEILPLSLEVVRLQHPNGSSRSRNSVGIKSGAPASGDGPGASAQARGLEAGRQALAGL-------GSVLSAQNAHVQSVFGAASLFLGGRNRRGEDGDG 1054          
BLAST of mRNA_L-elsbetiae_contig2004.6024.1 vs. uniprot
Match: A0A836CMC2_9STRA (Conserved oligomeric Golgi complex subunit 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMC2_9STRA)

HSP 1 Score: 107 bits (268), Expect = 5.390e-20
Identity = 79/215 (36.74%), Postives = 107/215 (49.77%), Query Frame = 0
Query:  488 LNSQSGRPLHSALTPP-----GCFAERLRGRIEEQQLEAAFVIADTNGDGVVDAEEAAEALQAVSFGASAALVLDPSPYTSFTLSEFSLFATRLLEEQR------PRQYLTSCLDSLLAESLNVWAEWALEKTAALLTEGCNALSTLCSNPGLTDDMWRQAHGIWQDKTIELDRD-DGDGIQETMHFPIMVSPAILCYIEGVAAELGRILSTADL 690
            L  + GR L  A+T P     G  A R  G +   QLEAAF IADTNGDG+++ EE  EALQAV+F  +  L      + S T  EF+L AT LLEEQ       P  +L   L SLLA S+ +WA       A L  +   AL+           + ++    W +  + LD D DGD ++E +  P   +PA+  Y+  +AAE   +   ADL
Sbjct:  740 LQGRRGRGLRQAVTAPKEGSAGGGAGRAVGLVGLDQLEAAFEIADTNGDGLLEGEEIGEALQAVAFSHADKLAQLEHAHASLTFVEFALLATPLLEEQARHPLEDPLVHLAEGLRSLLARSVKLWANLV---AACLNQQLQQALAQTARASAAACHLAQRQGATWHEHRLTLDSDLDGDSVEERVRLPAAATPALQRYVLALAAEAAALSCAADL 951          
BLAST of mRNA_L-elsbetiae_contig2004.6024.1 vs. uniprot
Match: W7TQZ7_9STRA (Conserved oligomeric Golgi complex subunit 1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQZ7_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 7.930e-12
Identity = 115/453 (25.39%), Postives = 183/453 (40.40%), Query Frame = 0
Query:  307 LDLWSLLFSQIFADLAEALLKESLVCIRKDVECRLDSILLAVTGNETRQSAQEGNNGFASHRLQQPHALMAHDILAAADTVVSLLASEIRDLAGDAWCLTERGDKTAADALKTSFYLLCVDMAAGLANHLRVALQE-----------------IHACIKAAAKQERRCLPYGSGIGDLEDAVGSFADAGLVIGRVAWMLNSQSGRPLHSALTP-------PGCFAE---------------RLRGR--------IEEQQLEAAFVIADTNGDGVVDAEEAAEALQAVSFGASAALVLDPSPY--TSFTLSEFSLFATRLLEEQRPRQYLTSCLDSLLAES----LNVWAEWALEKTAA-LLTEGCNALSTLCS---NPGLTD---DMWRQAHGIWQDKTIELDRDDGDGIQETMHFPIMVSPAILCYIEGVAAELGRILSTADLADPASGEAQ 699
            LD+W+ LFS  FA + E L + S+  + +    + + IL  V+ + +  S+           L Q     A ++  AAD +   L   +R +   A  L + GD+ AA AL +S +   + + + L++  R  LQE                 IH    + A      LP  S +     +  S  DA L++ R AW L + + R L S  +P       P   +E               R RG         I+  QLE+AF IAD+ G+G +   E  E L  +  G S A    PS Y  +S T +E  L     L+E +P    T+ L      +    L  WA   +      +L EG   L    +   N G+     D  R     W+++ +  + ++G  +++ +  P   SP +  +   +AAELGR+    D     SGE +
Sbjct:  484 LDVWASLFSTSFAAMLEDLFQASMTSLYQTWVGKFERILSVVSSSPSSSSS-----------LGQDRRFTAIEMAWAADHLYCCLVKGLRQIHRHARELVQDGDEAAAAALGSSLHAQTLSLLSRLSSFSRSWLQEWDGRCPLSSPSTLNQQSIHQDALSPAS-----LPSSSSL--TPPSCPSDMDAVLILARFAWRLLTTAPRTLLSPFSPVEPPIPDPLDASEDSVCNSGSRMNVKESRRRGSGTSGKVRSIDMVQLESAFTIADSRGEGELTPAELHECLDTL--GLSQASSSPPSSYPPSSATFAEVVLLCYAALDEDQPADPATAYLQDAFGRTFDLGLRAWARHTVRSLGERVLGEGGQGLGLEGAERRNGGMESRDKDSVRSRRPGWEERVLVQEDEEGRPLEDRIWIPTTPSPPLSVFCFSLAAELGRVAQGQDGIKGKSGEGE 916          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2004.6024.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FW61_ECTSI0.000e+075.31Conserved oligomeric Golgi complex subunit 1 n=2 T... [more]
A0A836CMC2_9STRA5.390e-2036.74Conserved oligomeric Golgi complex subunit 1 n=1 T... [more]
W7TQZ7_9STRA7.930e-1225.39Conserved oligomeric Golgi complex subunit 1 n=2 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainSMARTSM00054efh_1coord: 518..546
e-value: 0.0034
score: 26.6
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 514..549
score: 12.059
IPR033370Conserved oligomeric Golgi complex subunit 1PANTHERPTHR31658FAMILY NOT NAMEDcoord: 20..342
coord: 590..928

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2004contigL-elsbetiae_contig2004:14810..18099 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2004.6024.1mRNA_L-elsbetiae_contig2004.6024.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig2004 14549..18129 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig2004.6024.1 ID=prot_L-elsbetiae_contig2004.6024.1|Name=mRNA_L-elsbetiae_contig2004.6024.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=969bp
MKDSSDNDLVSNPPAKNISEVIQLMLHAPAAMWAALDSNRVLEAANLVQR
CRNGWADLSSSFSTGVDSSVAAFLRSHATYVEQFPHRIVLAGTRLLTHST
STQETAGALTALLQLQAPRDAKPLRCLLELLLRRRGGSVVAMLARATKAD
DANMLEEVLQTAVTTVQRTIVDVHAIFAPRLSGSCLLEELAHPSCCSQAS
FRLPSLEAKSLCTTWLSILAPKIRVFSERLLRATGDTNTLSRIRGALWEA
THGEGAWAISAPGTRAVVRDKAAEQALWAEAVLFAVDVSAIGGGTPGSGH
GASCMQLDLWSLLFSQIFADLAEALLKESLVCIRKDVECRLDSILLAVTG
NETRQSAQEGNNGFASHRLQQPHALMAHDILAAADTVVSLLASEIRDLAG
DAWCLTERGDKTAADALKTSFYLLCVDMAAGLANHLRVALQEIHACIKAA
AKQERRCLPYGSGIGDLEDAVGSFADAGLVIGRVAWMLNSQSGRPLHSAL
TPPGCFAERLRGRIEEQQLEAAFVIADTNGDGVVDAEEAAEALQAVSFGA
SAALVLDPSPYTSFTLSEFSLFATRLLEEQRPRQYLTSCLDSLLAESLNV
WAEWALEKTAALLTEGCNALSTLCSNPGLTDDMWRQAHGIWQDKTIELDR
DDGDGIQETMHFPIMVSPAILCYIEGVAAELGRILSTADLADPASGEAQG
AVESQSSTGGEPGMRGSTAGKATSKGAARYARSLAAVRASSDLRHALVGL
CEGSQSTAAHACEAAQLQLLLDALFLQRWVLDSQTSSSSMESVVSTLCDL
VDPINLQIYMPHLQEAASACWAACHTSLSLIFEQVSPGGTASSVAMSPDG
AVGSTSSFLALAPKARRFEILPLPLDVVRLQHPNGVSRPRNSAGHKSGSV
GGDESGASAQARGLEAGRQALAGLMGQVGSVGSVLSAQNVNVQSVFGAAS
LFLGGRNRRGDGDEGRMY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR033370COG1