prot_L-elsbetiae_contig1946.5779.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1946.5779.1
Unique Nameprot_L-elsbetiae_contig1946.5779.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length420
Homology
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BLAST of mRNA_L-elsbetiae_contig1946.5779.1 vs. uniprot
Match: A0A6H5K4Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4Z1_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 5.580e-55
Identity = 111/177 (62.71%), Postives = 124/177 (70.06%), Query Frame = 0 
Query:  108 AETPAEGAAGAATEGGDDVEEQERKRGLGELDRRQRKFTKAMKELRYSSGWKAVSDLVAEAGRVGLPLNVICLNAAMSVLARSGRWYEALDLLAKMRRGAPLRDV-GVADSEQARSPWKHPPAEREGEGAGAEQPVLFLPKPDTITFNAAISACGRGKKWKPAVELLDTMRREGLAP 283
            A+ PA G +      G   +++E    L E D RQRKFTK MK+L Y  GWKAV  L+AEAGRVGLPLNVICLNAAMSVLARSGRWYEALDLL+ MRRGA L DV G  D   A           EGE A +   +L LP+PDTITFN AI+ACGRGKKWKPAVELLD+MRREGL P
Sbjct:   38 ADGPATGVSQPTQGRGGGGKKEETLMRLDERDLRQRKFTKGMKQLGYRGGWKAVRGLIAEAGRVGLPLNVICLNAAMSVLARSGRWYEALDLLSMMRRGALLVDVDGGGDGSGADQGTGFREPRVEGEEASSST-MLVLPEPDTITFNTAITACGRGKKWKPAVELLDSMRREGLVP 213
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BLAST of mRNA_L-elsbetiae_contig1946.5779.1 vs. uniprot
Match: D7FX74_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX74_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 3.280e-11
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 0 
Query:  380 RMRSDPSRYPAPNTVCYNAALMALMRRGRWREARELLAEVA 420
            RMRSDPSRYPAPNTVC+NAALMALMR GRWREAR LL+EVA
Sbjct:  100 RMRSDPSRYPAPNTVCHNAALMALMRDGRWREARGLLSEVA 140
[Close]
BLAST of mRNA_L-elsbetiae_contig1946.5779.1 vs. uniprot
Match: A0A6H5LGC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGC4_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.430e-10
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 0 
Query:  381 MRSDPSRYPAPNTVCYNAALMALMRRGRWREARELLAEVA 420
            MRSDPSRYPAPNTVC+NAALMALMR GRWREAR LL+EVA
Sbjct:    1 MRSDPSRYPAPNTVCHNAALMALMRDGRWREARGLLSEVA 40
[Close]
BLAST of mRNA_L-elsbetiae_contig1946.5779.1 vs. uniprot
Match: D7FX75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX75_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 2.870e-6
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 0 
Query:  256 AISACGRGKKWKPAVELLDTMRREGLAP 283
            A+ ACGRGKKWKPAVELLD+MRREGL P
Sbjct:   82 AVRACGRGKKWKPAVELLDSMRREGLVP 109
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1946.5779.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K4Z1_9PHAE5.580e-5562.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX74_ECTSI3.280e-1190.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LGC4_9PHAE1.430e-1090.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX75_ECTSI2.870e-685.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 180..205
e-value: 0.0069
score: 16.6
coord: 394..418
e-value: 0.038
score: 14.2
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 286..316
e-value: 2.5E-5
score: 22.1
coord: 356..383
e-value: 0.0014
score: 16.7
coord: 322..354
e-value: 0.0011
score: 16.9
coord: 251..284
e-value: 2.0E-5
score: 22.5
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 248..295
e-value: 1.6E-10
score: 41.0
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 307..362
e-value: 3.5E-4
score: 20.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 354..384
score: 8.999
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 284..318
score: 10.106
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 392..420
score: 8.649
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 319..353
score: 10.271
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 176..206
score: 8.342
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 249..283
score: 11.783
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 314..388
e-value: 1.5E-11
score: 46.1
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 176..418
NoneNo IPR availableTMHMMTMhelixcoord: 12..34

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1946contigL-elsbetiae_contig1946:6141..12007 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1946.5779.1mRNA_L-elsbetiae_contig1946.5779.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1946 6141..12021 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1946.5779.1 ID=prot_L-elsbetiae_contig1946.5779.1|Name=mRNA_L-elsbetiae_contig1946.5779.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=420bp
MKDGDGSWGRWLPASYLTVLAVATVGNTVLAVVPRQGSVTDGLAFISPAS
SCTTTTTTRHRLPATAGLNKVAGRPYISADTRRPAPSGHGVTGISGRWFK
RREGQLRAETPAEGAAGAATEGGDDVEEQERKRGLGELDRRQRKFTKAMK
ELRYSSGWKAVSDLVAEAGRVGLPLNVICLNAAMSVLARSGRWYEALDLL
AKMRRGAPLRDVGVADSEQARSPWKHPPAEREGEGAGAEQPVLFLPKPDT
ITFNAAISACGRGKKWKPAVELLDTMRREGLAPDGFSYSTAISACKNCGQ
WETALDILDDMKCRGLGKDKHSLNAAIAACASAGRWEPAMEILKGMEANG
PVPDLFTYGSVMYALTQGGKLDLALETLRRMRSDPSRYPAPNTVCYNAAL
MALMRRGRWREARELLAEVA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf