prot_L-elsbetiae_contig1933.5724.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1933.5724.1
Unique Nameprot_L-elsbetiae_contig1933.5724.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length398
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1933.5724.1 vs. uniprot
Match: D7FR73_ECTSI (EsV-1-7 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR73_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 6.360e-8
Identity = 78/168 (46.43%), Postives = 84/168 (50.00%), Query Frame = 0 
Query:  111 TKNGQFCAQHAQAGMVDVVSKRCEFPGCGTKRS-FGEPGPRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGTRNREFXXXXAPDGMIILGKAGRPKEIPSDRKRRASTGLDGDDGAARRARRSKSSVD-----------APMDWSVLQSAAAAAYIGKMVP 266
            +K   FC  HA+ GM DVVSKRC F GC  +   FG PG R+ XXXXXXXXXXXXXXXXXXXXXXXXX       V GTR  E+    A  GMI L  +   KE                                           PMDWS LQSAAAAAYI KMVP
Sbjct:   31 SKTAPFCMSHAREGMEDVVSKRCAFQGCTVRNPRFGVPGSRRNXXXXXXXXXXXXXXXXXXXXXXXXXPKQPSFGVPGTRKAEYCAKHAAPGMICLRTSKSKKEAALGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPMDWSALQSAAAAAYISKMVP 198
[Close]
BLAST of mRNA_L-elsbetiae_contig1933.5724.1 vs. uniprot
Match: A0A6H5KEE1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEE1_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.430e-6
Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 0 
Query:    1 MPRTKCPKENCGKEPSFGKPGSRTAQFCALHAEAGMVNVRGKR 43
            MPRTKCP + CGKEPSFG  G+R+A++C +HA+   VNVR  R
Sbjct:    1 MPRTKCPVQGCGKEPSFGVAGTRSAKWCRVHADPSHVNVRANR 43
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1933.5724.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FR73_ECTSI6.360e-846.43EsV-1-7 (Partial) (Fragment) n=1 Tax=Ectocarpus si... [more]
A0A6H5KEE1_9PHAE2.430e-660.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1933contigL-elsbetiae_contig1933:4998..8732 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1933.5724.1mRNA_L-elsbetiae_contig1933.5724.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1933 3655..10476 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1933.5724.1 ID=prot_L-elsbetiae_contig1933.5724.1|Name=mRNA_L-elsbetiae_contig1933.5724.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=398bp
MPRTKCPKENCGKEPSFGKPGSRTAQFCALHAEAGMVNVRGKRCEHPDCN
TRPAFGVRFSKKVQFCRPHALEGMVDVSTKSCEHVDCFKRPTFGLPAVVE
GGQEVRSLTGTKNGQFCAQHAQAGMVDVVSKRCEFPGCGTKRSFGEPGPR
KNAQFCGKHAAPGMVDVISKKCNHPGCGKHPSFGVEGTRNREFCAKHAPD
GMIILGKAGRPKEIPSDRKRRASTGLDGDDGAARRARRSKSSVDAPMDWS
VLQSAAAAAYIGKMVPTAPPPVLSPAPPAALPPPAALPPTAPPMPPSVHS
PTMAPVVPPPVAALATLPMTALAAPPVAAPVAPPPVAAPVAPPPVAAPVA
APVATSLVAPAMALGMLPPPPPAPPATAAPLPDSLPPMTPPVTLGAP*
back to top