prot_L-elsbetiae_contig1926.5701.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig1926.5701.1
Unique Name	prot_L-elsbetiae_contig1926.5701.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	124

Homology

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BLAST of mRNA_L-elsbetiae_contig1926.5701.1 vs. uniprot
Match: D7G0W6_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W6_ECTSI)

HSP 1 Score: 233 bits (595), Expect = 1.440e-77
Identity = 117/123 (95.12%), Postives = 122/123 (99.19%), Query Frame = 0

Query:    1 MRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKGAVDHLSGFNVCGRYLIVLYYQPAKMAKRMDQQAKKKELEDLRAKLKVAKEEDAAGDTPATQ 123
            MRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVY+DIYDAK AVDHLSGFNVCGRYLIVLYYQPAKMAKRMDQQAKKKELE+LRAKLKVA+EEDAAGDTPA++
Sbjct:    1 MRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLIVLYYQPAKMAKRMDQQAKKKELEELRAKLKVAREEDAAGDTPASK 123

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BLAST of mRNA_L-elsbetiae_contig1926.5701.1 vs. uniprot
Match: A0A6S9GFW4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GFW4_HETAK)

HSP 1 Score: 184 bits (468), Expect = 3.540e-58
Identity = 87/113 (76.99%), Postives = 103/113 (91.15%), Query Frame = 0

Query:    2 RLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKGAVDHLSGFNVCGRYLIVLYYQPAKMAKRMDQQAKKKELEDLRAKLKVAKEED 114
            RLPPEVNR +YVRNLPFKI+A+EMYDIFGKYGAIRQIR+GD+ DT+GTAFVVYEDIYDAK AVDHLSGFNVCGRYLIVLYYQP +MAK+MDQ+ +++ELE+L+AK    ++ D
Sbjct:   12 RLPPEVNRVLYVRNLPFKITAEEMYDIFGKYGAIRQIRIGDKPDTKGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQPTRMAKKMDQERERRELEELKAKYLAERQND 124

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BLAST of mRNA_L-elsbetiae_contig1926.5701.1 vs. uniprot
Match: A0A7S2C985_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C985_9STRA)

HSP 1 Score: 182 bits (461), Expect = 4.390e-57
Identity = 87/112 (77.68%), Postives = 101/112 (90.18%), Query Frame = 0

Query:    2 RLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKGAVDHLSGFNVCGRYLIVLYYQPAKMAKRMDQQAKKKELEDLRAKLKVAKEE 113
            RLPPEVNR +Y+RNLPFKI+++EMYDIFGKYGAIRQIR+GD+ DTRGTAFVVYEDIYDAK AVDHLSGFNVCGRYLIVLYYQ A+M KR+D   K++ELE+L+AK  V+ EE
Sbjct:   12 RLPPEVNRVLYIRNLPFKITSEEMYDIFGKYGAIRQIRVGDKPDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQAARMEKRIDNDKKRRELEELKAKFNVSGEE 123

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BLAST of mRNA_L-elsbetiae_contig1926.5701.1 vs. uniprot
Match: A0A7S2DAY0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DAY0_9STRA)

HSP 1 Score: 180 bits (457), Expect = 1.850e-56
Identity = 86/112 (76.79%), Postives = 100/112 (89.29%), Query Frame = 0

Query:    2 RLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKGAVDHLSGFNVCGRYLIVLYYQPAKMAKRMDQQAKKKELEDLRAKLKVAKEE 113
            RLPPEVNR +YVRNLPFKI+++EMYDIFGKYGAIRQIR+GD+ DTRGTAFVVYEDIYDAK AVDHLSGFNVCGRYL+VLYYQ ++M KRMD   K+KELE+L+ K  V+ +E
Sbjct:   14 RLPPEVNRVLYVRNLPFKITSEEMYDIFGKYGAIRQIRVGDKPDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQASRMQKRMDNDKKRKELEELKQKYNVSADE 125

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BLAST of mRNA_L-elsbetiae_contig1926.5701.1 vs. uniprot
Match: A0A835YN30_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN30_9STRA)

HSP 1 Score: 179 bits (455), Expect = 3.380e-56
Identity = 87/111 (78.38%), Postives = 98/111 (88.29%), Query Frame = 0

Query:    2 RLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKGAVDHLSGFNVCGRYLIVLYYQPAKMAKRMDQQAKKKELEDLRAKLKVAKE 112
            RLPPEVNR +YVRNLPFKI+ADEMYDIFGKYGAIRQIRLGD+ DTRGTAFVVYEDIYDAK AVDHLSGFNVCGRYLIVLYYQ  K  KR+D+  K++E+E+++AK  V  E
Sbjct:   11 RLPPEVNRILYVRNLPFKITADEMYDIFGKYGAIRQIRLGDKPDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQSTKALKRVDEMKKRREIEEIKAKFGVGGE 121

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BLAST of mRNA_L-elsbetiae_contig1926.5701.1 vs. uniprot
Match: R1DMS8_EMIHU (RRM domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DMS8_EMIHU)

HSP 1 Score: 179 bits (454), Expect = 5.640e-56
Identity = 86/109 (78.90%), Postives = 99/109 (90.83%), Query Frame = 0

Query:    1 MRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKGAVDHLSGFNVCGRYLIVLYYQPAKMAKRMDQQAKKKELEDLRAKLKV 109
            MRLPPEVNRA+YVRNLPFKI+A+EMYDIFGK+GAIRQIRLG+  DTRGTAFVVYEDIYDAK AVDHLSGFNVCGRYL+VLYYQ  KM KR+D + ++KEL ++RAKL +
Sbjct:   10 MRLPPEVNRALYVRNLPFKITAEEMYDIFGKFGAIRQIRLGNASDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQQTKMQKRLDTEREQKELAEMRAKLGI 118

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BLAST of mRNA_L-elsbetiae_contig1926.5701.1 vs. uniprot
Match: A0A7S2S8J7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8J7_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.610e-55
Identity = 84/111 (75.68%), Postives = 99/111 (89.19%), Query Frame = 0

Query:    2 RLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKGAVDHLSGFNVCGRYLIVLYYQPAKMAKRMDQQAKKKELEDLRAKLKVAKE 112
            RLPPEVNR VYVRNLPFKISA+E+YDIFGKYGA+RQ+RLGD+ DTRGTAFVVYEDIYDAK AVDHL+GFNVCGRYL+VLYYQ +KM +R+D Q K++ELE+L+ K  +  E
Sbjct:   16 RLPPEVNRVVYVRNLPFKISAEEIYDIFGKYGALRQVRLGDKPDTRGTAFVVYEDIYDAKNAVDHLNGFNVCGRYLVVLYYQASKMQERIDNQRKRQELEELKKKYNIQTE 126

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BLAST of mRNA_L-elsbetiae_contig1926.5701.1 vs. uniprot
Match: A0A7S3SDL9_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SDL9_9SPIT)

HSP 1 Score: 176 bits (445), Expect = 1.320e-54
Identity = 83/107 (77.57%), Postives = 97/107 (90.65%), Query Frame = 0

Query:    1 MRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKGAVDHLSGFNVCGRYLIVLYYQPAKMAKRMDQQAKKKELEDLRAKL 107
            +RLPPEVNRA+YVRNLPFKISA+EMYDIFGK+GA+RQ+RLG   DTRGTAFVVYEDIYDAK AVDHLSGFNVCGRYL+VLYYQ  KM KR+D + +++EL ++RAKL
Sbjct:   16 LRLPPEVNRALYVRNLPFKISAEEMYDIFGKFGALRQVRLGSAPDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQQTKMQKRLDTEREQRELAEMRAKL 122

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BLAST of mRNA_L-elsbetiae_contig1926.5701.1 vs. uniprot
Match: A0A7S3HNH0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNH0_9STRA)

HSP 1 Score: 175 bits (443), Expect = 1.420e-54
Identity = 84/110 (76.36%), Postives = 96/110 (87.27%), Query Frame = 0

Query:    4 PPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKGAVDHLSGFNVCGRYLIVLYYQPAKMAKRMDQQAKKKELEDLRAKLKVAKEE 113
            PPEVNR +YVRNLPFKI+A+EMYDIFGKYGAIRQIRLGD+QDTRGTAFVVYEDIYDAK AVDHLSGFNVC RYLIVLYYQ  KM K  D  +K+KE++D++AK  +  +E
Sbjct:    1 PPEVNRVLYVRNLPFKITAEEMYDIFGKYGAIRQIRLGDKQDTRGTAFVVYEDIYDAKNAVDHLSGFNVCNRYLIVLYYQQTKMQKVFDNNSKRKEVDDMKAKFGIKTDE 110

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BLAST of mRNA_L-elsbetiae_contig1926.5701.1 vs. uniprot
Match: A0A067D1A1_SAPPC (Pre-mRNA branch site p14-like protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067D1A1_SAPPC)

HSP 1 Score: 174 bits (441), Expect = 4.040e-54
Identity = 85/108 (78.70%), Postives = 97/108 (89.81%), Query Frame = 0

Query:    2 RLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKGAVDHLSGFNVCGRYLIVLYYQPAKMAKRMDQQAKKKELEDLRAKLKV 109
            RLPPEVNR +YVRNLPFKIS+DEMYDIFGKYGAIRQIRLG   DTRGTAFVVYEDIYDAK AVDHLSGFNVCGRYL+VLYYQ  +++K+MD QAK++EL +L+A+  V
Sbjct:   14 RLPPEVNRVLYVRNLPFKISSDEMYDIFGKYGAIRQIRLGVNADTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQANRVSKKMDVQAKQQELAELKARYGV 121

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig1926.5701.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig1926.5701.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G0W6_ECTSI	1.440e-77	95.12	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6S9GFW4_HETAK	3.540e-58	76.99	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A7S2C985_9STRA	4.390e-57	77.68	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
A0A7S2DAY0_9STRA	1.850e-56	76.79	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A835YN30_9STRA	3.380e-56	78.38	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
R1DMS8_EMIHU	5.640e-56	78.90	RRM domain-containing protein n=1 Tax=Emiliania hu...	[more]
A0A7S2S8J7_9STRA	1.610e-55	75.68	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A7S3SDL9_9SPIT	1.320e-54	77.57	Hypothetical protein n=1 Tax=Strombidinopsis acumi...	[more]
A0A7S3HNH0_9STRA	1.420e-54	76.36	Hypothetical protein n=1 Tax=Spumella elongata Tax...	[more]
A0A067D1A1_SAPPC	4.040e-54	78.70	Pre-mRNA branch site p14-like protein n=4 Tax=Sapr...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 90..113
None	No IPR available	PANTHER	PTHR12785:SF7	SPLICING FACTOR 3B SUBUNIT 6-LIKE PROTEIN	coord: 2..116
None	No IPR available	PANTHER	PTHR12785	splicing factor 3B	coord: 2..116
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 10..80 e-value: 5.3E-14 score: 62.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 11..77 e-value: 1.2E-14 score: 53.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 9..84 score: 15.75
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 5..115 e-value: 1.4E-21 score: 78.6
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..91

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig1926	contig	L-elsbetiae_contig1926:6922..12014 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig1926.5701.1	mRNA_L-elsbetiae_contig1926.5701.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig1926 6922..12014 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig1926.5701.1 ID=prot_L-elsbetiae_contig1926.5701.1|Name=mRNA_L-elsbetiae_contig1926.5701.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
MRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTA
FVVYEDIYDAKGAVDHLSGFNVCGRYLIVLYYQPAKMAKRMDQQAKKKEL
EDLRAKLKVAKEEDAAGDTPATQ*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf