prot_L-elsbetiae_contig1785.5087.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1785.5087.1
Unique Nameprot_L-elsbetiae_contig1785.5087.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length819
Homology
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BLAST of mRNA_L-elsbetiae_contig1785.5087.1 vs. uniprot
Match: A0A6H5K7R5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R5_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 5.190e-28
Identity = 86/153 (56.21%), Postives = 108/153 (70.59%), Query Frame = 0 
Query:  501 KALTDAIKSARS--GTVTTGPDTKALGSGGPVRGV-VRDPQEALVDGIRSKKSAAMATVRKQTEVVTAAQSNLSDNSKKLVTVEKKIADYKFKMKTTKTTKVRQQLEADIGAQQKTAAALRANIKTAEGTIKEAGKELKASTKESKDLAAQEL 650
            KALTD IK+AR   GTV  GPDTKA+ +   V     +DPQE  ++ IR+++SAAM TVR Q+EV+ AAQ  LSDN+KKL   EK IAD K+KMKTT+  KVR QLE  I  +Q+ AA  RANI  AE  IK AGKE++ +TKESK LAA+++
Sbjct:  295 KALTDKIKAAREDFGTVKMGPDTKAIATTTKVASKPTKDPQEVALEEIRAQRSAAMKTVRTQSEVLKAAQIKLSDNNKKLENAEKDIADEKYKMKTTRVPKVRTQLEVAIAEKQQVAAKARANINEAEAVIKAAGKEVQNATKESKALAARQV 447
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BLAST of mRNA_L-elsbetiae_contig1785.5087.1 vs. uniprot
Match: D8LCQ4_ECTSI (SHQ1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCQ4_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.920e-7
Identity = 42/81 (51.85%), Postives = 55/81 (67.90%), Query Frame = 0 
Query:  501 KALTDAIKSARS--GTVTTGPDTKALGSGGPVRGV---VRDPQEALVDGIRSKKSAAMATVRKQTEVVTAAQSNLSDNSKK 576
            KALTD IK+AR   GTV  GPD KA+ +    +      +DPQE  ++ IR+++SAAM TVR Q+EV+ AAQ  LSDN+KK
Sbjct:  264 KALTDKIKAAREDFGTVKMGPDKKAIATTTTTKVASKPTKDPQEVALEEIRAQRSAAMKTVRTQSEVLKAAQIKLSDNNKK 344
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1785.5087.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K7R5_9PHAE5.190e-2856.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCQ4_ECTSI1.920e-751.85SHQ1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 600..676
NoneNo IPR availableCOILSCoilCoilcoord: 331..384
NoneNo IPR availableCOILSCoilCoilcoord: 734..811
NoneNo IPR availableCOILSCoilCoilcoord: 679..713
NoneNo IPR availableCOILSCoilCoilcoord: 231..319
NoneNo IPR availableCOILSCoilCoilcoord: 481..501
NoneNo IPR availableCOILSCoilCoilcoord: 178..223
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..818
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1785contigL-elsbetiae_contig1785:7873..22685 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1785.5087.1mRNA_L-elsbetiae_contig1785.5087.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1785 6738..22703 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1785.5087.1 ID=prot_L-elsbetiae_contig1785.5087.1|Name=mRNA_L-elsbetiae_contig1785.5087.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=819bp
MKGCSVFWTVCAVGGFASISEAFLQPSSILSSTRRTSGALRRNTKSAAAL
PCRMSASPASSGNDNEEESDDTARPAAAADADAPAAASNNPFLVAAVGMA
LLSSDPAATLAAQSARDAVFPGGGAPAPPVLMLSAATVGDPGLKDLLGEY
NSARDPSAATPKPAPAAPVDAKEAAAAKAAQEAAAKAADAAAKEAKAKEA
AAAKAAKEETAAAKAQADQAAAKAAKEEKAKDAAAAKVAKEEAAAAKAKE
AAAAKAAKEETAAAKAQADQAAAKAAKEEKAKEATAAKAAKANADQTAAK
AAKEEKAKDAAAAKAAKEEAAAAKAKEVAAAKAAKEETAAAKANADQAAA
KAAKEEKAKDAAAAKAAKEEKAAAAAAAKEAEKAAAAAAKKQAPAPAPVP
PPAKVEAPKATPVPPPAPVAPPAPKVEPAPMAPKPVAKAPAPVAPKPKPA
PAPQKKAAPSGPSPQQAKAAQDKAKADAAAKEKAEKAVVEAKERAAAAEK
KALTDAIKSARSGTVTTGPDTKALGSGGPVRGVVRDPQEALVDGIRSKKS
AAMATVRKQTEVVTAAQSNLSDNSKKLVTVEKKIADYKFKMKTTKTTKVR
QQLEADIGAQQKTAAALRANIKTAEGTIKEAGKELKASTKESKDLAAQEL
REEASLRKAQAKAAKAKADAKAKAIEEGKKQRERAVKDAKVRAEQKQKDL
ERAKVDAAKAKEKAFKDKQLKLKQDADAKKKKLAQDAKDRVAAEKRAKLE
LKQNRDAKVKALEKAKKDRADAAKRAEQEQKQKKNAEKRALQEAERERVA
ATRKAEAEAKQRARDMVL*
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