prot_L-elsbetiae_contig17361.4859.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig17361.4859.1
Unique Nameprot_L-elsbetiae_contig17361.4859.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length140
Homology
BLAST of mRNA_L-elsbetiae_contig17361.4859.1 vs. uniprot
Match: D7FI10_ECTSI (DNA polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI10_ECTSI)

HSP 1 Score: 268 bits (685), Expect = 1.320e-80
Identity = 128/138 (92.75%), Postives = 133/138 (96.38%), Query Frame = 0
Query:    2 QIQGLDLVRREWCTLSKDTGKFVLDRVLSGEAREAVVAGVHDHLEALAVSMRAGEVEVPRYVITKGLNKAPHEYPDAKSQPHVQVALAMMKAGKSVNVGHHIPYVMCKIEGAASPAERARHPDDVLRSNGQLEVDVEW 139
            +++GLDLVRREWCTLSKDTGKFVLDRVLSGEARE VV G+HDHLEALA SMRAGEVEVPRYVITKGLNKAPHEYPDAKSQPHVQVALAMMKAGKSVNVGHHIPYVMCKIEGA SPAERARHPDDVLRS G+LEVDVEW
Sbjct: 1205 EMKGLDLVRREWCTLSKDTGKFVLDRVLSGEARETVVTGIHDHLEALAASMRAGEVEVPRYVITKGLNKAPHEYPDAKSQPHVQVALAMMKAGKSVNVGHHIPYVMCKIEGATSPAERARHPDDVLRSGGKLEVDVEW 1342          
BLAST of mRNA_L-elsbetiae_contig17361.4859.1 vs. uniprot
Match: A0A4D9CVK1_9STRA (DNA polymerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVK1_9STRA)

HSP 1 Score: 206 bits (523), Expect = 8.580e-59
Identity = 97/138 (70.29%), Postives = 118/138 (85.51%), Query Frame = 0
Query:    2 QIQGLDLVRREWCTLSKDTGKFVLDRVLSGEAREAVVAGVHDHLEALAVSMRAGEVEVPRYVITKGLNKAPHEYPDAKSQPHVQVALAMMKAGKSVNVGHHIPYVMCKIEGAASPAERARHPDDVLRSNGQLEVDVEW 139
            +++GLDLVRR+WC LSK+TG+FV+D++LSGE R+AVVA +H +LE LA  MRAGEV+V +Y ITKGLNKAPHEYPDAKSQPH+QVAL+MMKAGK VNVG HI YV+C+ EGA + AERA  PDDV  S G+L+VDVEW
Sbjct: 1236 ELKGLDLVRRDWCVLSKETGRFVIDQILSGENRDAVVATIHSYLEELAKRMRAGEVDVRQYAITKGLNKAPHEYPDAKSQPHLQVALSMMKAGKPVNVGDHIEYVICEKEGAKAAAERAFLPDDVKHSEGELKVDVEW 1373          
BLAST of mRNA_L-elsbetiae_contig17361.4859.1 vs. uniprot
Match: A0A836C9W2_9STRA (DNA-directed DNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9W2_9STRA)

HSP 1 Score: 189 bits (481), Expect = 2.300e-55
Identity = 86/138 (62.32%), Postives = 114/138 (82.61%), Query Frame = 0
Query:    2 QIQGLDLVRREWCTLSKDTGKFVLDRVLSGEAREAVVAGVHDHLEALAVSMRAGEVEVPRYVITKGLNKAPHEYPDAKSQPHVQVALAMMKAGKSVNVGHHIPYVMCKIEGAASPAERARHPDDVLRSNGQLEVDVEW 139
            +++GLDLVRR+WC LSK+ G+ VLDR+LSG+ARE VV  +H+HL ALA +MRAG V + +YVITKGL+K P +YP+AK++PH+QVA+AM +AGK VNVG+HIPY++C+     +PAERARHP+DV+RS G L  DVEW
Sbjct:  124 EVKGLDLVRRDWCGLSKEAGQHVLDRILSGDARETVVESIHEHLRALADAMRAGAVPIGQYVITKGLSKPPQDYPNAKNEPHLQVAMAMQRAGKPVNVGNHIPYIICR--QTQTPAERARHPEDVMRSGGALVPDVEW 259          
BLAST of mRNA_L-elsbetiae_contig17361.4859.1 vs. uniprot
Match: B8LEG9_THAPS (DNA polymerase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LEG9_THAPS)

HSP 1 Score: 179 bits (455), Expect = 1.190e-49
Identity = 83/145 (57.24%), Postives = 112/145 (77.24%), Query Frame = 0
Query:    2 QIQGLDLVRREWCTLSKDTGKFVLDRVLSGEAREAVVAGVHDHLEALAVSMRAGEVEVPRYVITKGLNKAPHEYPDAKSQPHVQVALAMMKAGKSVNVGHHIPYVMCKIEGAASP-------AERARHPDDVLRSNGQLEVDVEW 139
            +++GLDLVRR+WC  SK++GKFVLD++LSGE +E VV+ +HDHLE +A  MR+GE+ + +Y+ITKGLNK P+EYPDAKS PHV VA  M+K  K+V++G HIPYV+ ++E    P       AERARHPD++ RSNG ++ DVEW
Sbjct:  741 EMKGLDLVRRDWCIQSKESGKFVLDQILSGEEKEVVVSNIHDHLEKVAQQMRSGELPLDKYIITKGLNKHPNEYPDAKSLPHVYVAKMMLKDHKAVSIGDHIPYVITELEKEEEPSNKKTLAAERARHPDEIERSNGAMKPDVEW 885          
BLAST of mRNA_L-elsbetiae_contig17361.4859.1 vs. uniprot
Match: A0A8J9S0I2_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S0I2_PHATR)

HSP 1 Score: 172 bits (436), Expect = 1.830e-48
Identity = 79/147 (53.74%), Postives = 107/147 (72.79%), Query Frame = 0
Query:    2 QIQGLDLVRREWCTLSKDTGKFVLDRVLSGEAREAVVAGVHDHLEALAVSMRAGEVEVPRYVITKGLNKAPHEYPDAKSQPHVQVALAMMKAGKSVNVGHHIPYVMCKIEGA---------ASPAERARHPDDVLRSNGQLEVDVEW 139
            +++GLDLVRR+WC  SKDTG++V +++LSG+  + V+  +H HLE LA  MRAG + + +Y ITKGL+K P+EYPD KSQPHVQVA+ M+K  + VN G HIPY++   E A         +S AERARHP+++LRSNG L+ DVEW
Sbjct:  136 ELKGLDLVRRDWCIQSKDTGRYVTEQILSGQESDIVIENIHSHLEELATKMRAGNLPLEKYTITKGLSKHPNEYPDGKSQPHVQVAMVMLKNNRPVNTGDHIPYIITVSEEAEAEDKKPKSSSSAERARHPEEILRSNGALKPDVEW 282          
BLAST of mRNA_L-elsbetiae_contig17361.4859.1 vs. uniprot
Match: B7S420_PHATC (DNA polymerase (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7S420_PHATC)

HSP 1 Score: 172 bits (436), Expect = 4.340e-47
Identity = 79/147 (53.74%), Postives = 107/147 (72.79%), Query Frame = 0
Query:    2 QIQGLDLVRREWCTLSKDTGKFVLDRVLSGEAREAVVAGVHDHLEALAVSMRAGEVEVPRYVITKGLNKAPHEYPDAKSQPHVQVALAMMKAGKSVNVGHHIPYVMCKIEGA---------ASPAERARHPDDVLRSNGQLEVDVEW 139
            +++GLDLVRR+WC  SKDTG++V +++LSG+  + V+  +H HLE LA  MRAG + + +Y ITKGL+K P+EYPD KSQPHVQVA+ M+K  + VN G HIPY++   E A         +S AERARHP+++LRSNG L+ DVEW
Sbjct:  736 ELKGLDLVRRDWCIQSKDTGRYVTEQILSGQESDIVIENIHSHLEELATKMRAGNLPLEKYTITKGLSKHPNEYPDGKSQPHVQVAMVMLKNNRPVNTGDHIPYIITVSEEAEAEDKKPKSSSSAERARHPEEILRSNGALKPDVEW 882          
BLAST of mRNA_L-elsbetiae_contig17361.4859.1 vs. uniprot
Match: K0T5T4_THAOC (DNA polymerase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T5T4_THAOC)

HSP 1 Score: 172 bits (435), Expect = 5.690e-47
Identity = 81/149 (54.36%), Postives = 112/149 (75.17%), Query Frame = 0
Query:    2 QIQGLDLVRREWCTLSKDTGKFVLDRVLSGEAREAVVAGVHDHLEALAVSMRAGEVEVPRYVITKGLNKAPHEYPDAKSQPHVQVALAMMKAGKSVNVGHHIPYVMCKI----EGAASPA-------ERARHPDDVLRSNGQLEVDVEW 139
            +++GLDLVRR+WC  SKD+GK+V+D++LSGE RE +V+ +HDHLE +A  MR+GE+ + +YVITKGLNK P+EYPD KS PHV VA  M+K  K+V++G HIPYV+ +     EG  S A       ERARHPD++ RS+G+L+ D++W
Sbjct:  606 ELKGLDLVRRDWCLQSKDSGKYVIDQILSGEDRELIVSNIHDHLENVAKKMRSGELSLDKYVITKGLNKHPNEYPDGKSLPHVHVAKTMLKNHKAVSIGDHIPYVITESKDAEEGGNSAANSKKNSSERARHPDEIERSSGELKPDIDW 754          
BLAST of mRNA_L-elsbetiae_contig17361.4859.1 vs. uniprot
Match: A0A7S1Y2V4_9STRA (DNA-directed DNA polymerase (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y2V4_9STRA)

HSP 1 Score: 165 bits (417), Expect = 7.140e-47
Identity = 76/140 (54.29%), Postives = 104/140 (74.29%), Query Frame = 0
Query:    8 LVRREWCTLSKDTGKFVLDRVLSGEAREAVVAGVHDHLEALAVSMRAGEVEVPRYVITKGLNKAPHEYPDAKSQPHVQVALAMMKAGKSVNVGHHIPYVMC--------KIEGAASPAERARHPDDVLRSNGQLEVDVEW 139
            +VRR+WC  SK+TG++VLD++LSG+ R+AVV  +HDHLE LA  MR+G++ + +YVITKGL+K P++YPD K+QPHV VA  M+KA + VN+G HIPYV+         K     S  ERARHP+++ RSNG+L+ DVEW
Sbjct:    1 MVRRDWCIQSKETGRYVLDQILSGDDRDAVVNNIHDHLEQLAKRMRSGDLPLEKYVITKGLSKHPNDYPDGKTQPHVHVAKMMLKANRPVNIGDHIPYVITMQSSEQEQKASTKTSAVERARHPEEIKRSNGELKPDVEW 140          
BLAST of mRNA_L-elsbetiae_contig17361.4859.1 vs. uniprot
Match: A0A7S1BTL0_9STRA (DNA polymerase (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BTL0_9STRA)

HSP 1 Score: 170 bits (431), Expect = 2.050e-46
Identity = 77/138 (55.80%), Postives = 105/138 (76.09%), Query Frame = 0
Query:    2 QIQGLDLVRREWCTLSKDTGKFVLDRVLSGEAREAVVAGVHDHLEALAVSMRAGEVEVPRYVITKGLNKAPHEYPDAKSQPHVQVALAMMKAGKSVNVGHHIPYVMCKIEGAASPAERARHPDDVLRSNGQLEVDVEW 139
            +++GLDLVRR+WC  SKD+G+FV+D++LSG+ RE V+  +H HLE LA  MR  E+ + +YVITK L+K P EYPDAKSQPHV VAL M+K  + ++ G HIPYV+C    + + AERARHP+++ RS G L+VD+EW
Sbjct:  758 ELKGLDLVRRDWCIQSKDSGRFVIDQILSGQEREQVIDNIHRHLEELAKKMRENELALDKYVITKSLSKHPKEYPDAKSQPHVLVALDMLKNNRPISTGDHIPYVICLENESKNFAERARHPEEIERSAGALKVDIEW 895          
BLAST of mRNA_L-elsbetiae_contig17361.4859.1 vs. uniprot
Match: A0A7S2UH04_9STRA (DNA polymerase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UH04_9STRA)

HSP 1 Score: 168 bits (426), Expect = 9.860e-46
Identity = 81/151 (53.64%), Postives = 109/151 (72.19%), Query Frame = 0
Query:    1 TQIQGLDLVRREWCTLSKDTGKFVLDRVLSGEAREAVVAGVHDHLEALAVSMRAGEVEVPRYVITKGLNKAPHEYPDAKSQPHVQVALAMMKAGKSVNVGHHIPYVMCKI------EGAASP------AERARHPDDVLRSNGQLEVDVEW 139
            T+ +GLDLVRR+WC  SKDTG+++LD++LSG+ RE+VV  +HDHLE LA  MRA EV + +YVITKGL+K P+EYPD KSQ HV VA  M+K  ++VN G HIPY++         +G+A P       ERARHP++++RS G L+ D+EW
Sbjct: 1173 TETKGLDLVRRDWCIQSKDTGRYILDQILSGQERESVVEKIHDHLEDLAKRMRAAEVPLEKYVITKGLSKHPNEYPDGKSQAHVHVAKMMLKNQRAVNTGDHIPYIITAPLDEEDEQGSAKPKKAPTAVERARHPEEIIRSGGILKPDIEW 1323          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17361.4859.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI10_ECTSI1.320e-8092.75DNA polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
A0A4D9CVK1_9STRA8.580e-5970.29DNA polymerase n=1 Tax=Nannochloropsis salina CCMP... [more]
A0A836C9W2_9STRA2.300e-5562.32DNA-directed DNA polymerase n=1 Tax=Tribonema minu... [more]
B8LEG9_THAPS1.190e-4957.24DNA polymerase (Fragment) n=1 Tax=Thalassiosira ps... [more]
A0A8J9S0I2_PHATR1.830e-4853.74Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
B7S420_PHATC4.340e-4753.74DNA polymerase (Fragment) n=1 Tax=Phaeodactylum tr... [more]
K0T5T4_THAOC5.690e-4754.36DNA polymerase n=1 Tax=Thalassiosira oceanica TaxI... [more]
A0A7S1Y2V4_9STRA7.140e-4754.29DNA-directed DNA polymerase (Fragment) n=1 Tax=Gra... [more]
A0A7S1BTL0_9STRA2.050e-4655.80DNA polymerase (Fragment) n=1 Tax=Corethron hystri... [more]
A0A7S2UH04_9STRA9.860e-4653.64DNA polymerase n=1 Tax=Attheya septentrionalis Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006134DNA-directed DNA polymerase, family B, multifunctional domainPFAMPF00136DNA_pol_Bcoord: 3..136
e-value: 5.3E-22
score: 78.2
IPR042087DNA polymerase family B, C-terminal domainGENE3D1.10.132.60coord: 6..139
e-value: 9.8E-45
score: 154.2
NoneNo IPR availablePANTHERPTHR45861FAMILY NOT NAMEDcoord: 3..139
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 3..138

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17361contigL-elsbetiae_contig17361:1766..2812 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17361.4859.1mRNA_L-elsbetiae_contig17361.4859.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig17361 1766..2812 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig17361.4859.1 ID=prot_L-elsbetiae_contig17361.4859.1|Name=mRNA_L-elsbetiae_contig17361.4859.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=140bp
TQIQGLDLVRREWCTLSKDTGKFVLDRVLSGEAREAVVAGVHDHLEALAV
SMRAGEVEVPRYVITKGLNKAPHEYPDAKSQPHVQVALAMMKAGKSVNVG
HHIPYVMCKIEGAASPAERARHPDDVLRSNGQLEVDVEW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006134DNA-dir_DNA_pol_B_multi_dom
IPR042087DNA_pol_B_C