prot_L-elsbetiae_contig1630.4305.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1630.4305.1
Unique Nameprot_L-elsbetiae_contig1630.4305.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length401
Homology
BLAST of mRNA_L-elsbetiae_contig1630.4305.1 vs. uniprot
Match: A0A6H5JXC6_9PHAE (BSD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC6_9PHAE)

HSP 1 Score: 373 bits (957), Expect = 1.940e-120
Identity = 304/413 (73.61%), Postives = 327/413 (79.18%), Query Frame = 0
Query:    1 MSEKEFWTKYIQSAYFNRDRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLGAGSVDPMVDLTSQFGDHHSREVDDSDPAEELTEEANKRKEVVGKFNRHARLVMQPPDGGGAG--AGRRPGLVDSAQSATDMPELRLHKETAQEKLEIAHKGRYHGGXXXXXXXXXXXT--------ANGSSSLARPQSPR--IIGTVTLGEAKAQLGPGFSILRERPCVAGAVAAPGQALSALRECTRETDRGIGDAFHLRGYPEDFIGGMHRHFQIVGELLRHFYASLDRPRSDAGAVAKLARLEARMNAKYKELTEERKALPRNADGNRLSAVIKPLLDCLDHAFGRLEERRARRAG 401
            MSEKEFWTKYIQSAYFNRDRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX              R   G  D  V      G   SR VDDSDP EEL+E ANKRKEVVGKFNRHARLVMQP          GRRP LVDSA SATDMPELRL +E A++KL+IAHK RY GG        XXX         A  + SL+RPQSPR  ++ TVTL EAKAQLGPGFSIL ERP V+GAV +PGQA+SAL+ECTRE  RG+GDAFHL+GYPEDFIG MHRHFQIVGELLRHFYA+LDRP+SDAGA AKL RLE RMN+KYKELTEER+ LPRNADGNRLSAVIKPLLDCLDHAF +LEE ++R+ G
Sbjct:  216 MSEKEFWTKYIQSAYFNRDRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWRRQARERK-----RGPYGGPDFAVG-----GSPRSRGVDDSDPTEELSEAANKRKEVVGKFNRHARLVMQPXXXXXXXXVTGRRPALVDSAASATDMPELRLREEVARDKLDIAHKNRYRGGGGTNGADSXXXXXXXXXXXGAVSAGSLSRPQSPRGMLVETVTLAEAKAQLGPGFSILGERPRVSGAVTSPGQAMSALKECTREASRGVGDAFHLQGYPEDFIGSMHRHFQIVGELLRHFYATLDRPKSDAGAAAKLDRLETRMNSKYKELTEERRILPRNADGNRLSAVIKPLLDCLDHAFLKLEESKSRKGG 618          
BLAST of mRNA_L-elsbetiae_contig1630.4305.1 vs. uniprot
Match: D8LFT0_ECTSI (TFIIH subunit (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFT0_ECTSI)

HSP 1 Score: 357 bits (917), Expect = 4.520e-114
Identity = 296/413 (71.67%), Postives = 318/413 (77.00%), Query Frame = 0
Query:    1 MSEKEFWTKYIQSAYFNRDRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLGAGSVDPMVDLTSQFGDHHSREVDDSDPAEELTEEANKRKEVVGKFNRHARLVMQPPDGGGAGAG--RRPGLVDSAQSATDMPELRLHKETAQEKLEIAHKGRYHGGXXXXXXXXXXXT--------ANGSSSLARPQSPR--IIGTVTLGEAKAQLGPGFSILRERPCVAGAVAAPGQALSALRECTRETDRGIGDAFHLRGYPEDFIGGMHRHFQIVGELLRHFYASLDRPRSDAGAVAKLARLEARMNAKYKELTEERKALPRNADGNRLSAVIKPLLDCLDHAFGRLEERRARRAG 401
            MSEKEFWTKYIQSAYFNRDRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX              RL +GSVDPMVDLTSQ+GDHH+REVDDSDP EEL+E ANKRKEVVGKFNRHARLVMQP           RRP LVDSA SATDMPELRL +E AQEKL+IAHK RY GG                    A    SL+RPQSPR  ++ TVTL EAKAQLGPGFSIL ERP V+GAVA+PGQA+SAL+ECTRE  RG+GDAFHL+G                     HFYASLDRP+SDAGA AKL RLE RMN+KYKELTEER+ LPRNADGNRLSAVIKPLLD LDHAF +LEE ++R+ G
Sbjct:  289 MSEKEFWTKYIQSAYFNRDRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG-------------RLESGSVDPMVDLTSQWGDHHAREVDDSDPTEELSEAANKRKEVVGKFNRHARLVMQPXXXXXXXXXXXRRPALVDSAASATDMPELRLREEVAQEKLDIAHKNRYRGGGGTNRADSNGGXXXXXXSSGALSVGSLSRPQSPRGMVVETVTLAEAKAQLGPGFSILGERPRVSGAVASPGQAMSALKECTREASRGVGDAFHLQG---------------------HFYASLDRPKSDAGAAAKLDRLETRMNSKYKELTEERRRLPRNADGNRLSAVIKPLLDSLDHAFLKLEESKSRKGG 667          
BLAST of mRNA_L-elsbetiae_contig1630.4305.1 vs. uniprot
Match: A0A835YZ40_9STRA (BSD domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ40_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.480e-34
Identity = 114/299 (38.13%), Postives = 152/299 (50.84%), Query Frame = 0
Query:  114 GAGSVDPMVDLTSQFGDHHSREVDDSDPAEELTEEANKRKEVVGKFNRHARLVMQPPDGGGAGAGRRPGLVDSAQSATDMPELRLHKETAQEKLEIAHKGRYHGGXXXXXXXXXXXTANG-----------SSSLARPQSPRII-------GTVTLGEAKAQLGPGFSILRERPCVAGAVAAPGQALSALRECTRET-DRGIG-DAFHLRGYPEDFIGGMHRHFQIVGELLRHFYASLD--RPRSDAGAVAK-LARLEARMNAKYKELTEERKALPRNADGNRLSAVIKPLLDCLDHAF 389
            G   VDP VDL +QF D+HSR VDD  P E     A   + V+ + NRHA LVM+P  GGG          D   +ATD+PEL        + L +A+  RY G      XXXXXX               ++ + R + P           T T   A A   P  ++    P +A A+  P +AL  L+ CT+E    G G  A   + +P++F+  MHRHFQ++GELLRHFYA +        +  V K L RL  +M +KY EL   R+ LPR+A G++LS +IKPLLD LD AF
Sbjct:  329 GTEGVDPTVDLAAQFSDYHSRPVDDRGPEERAG--AADAQAVIERLNRHAALVMRPRAGGGGAP------HDDPAAATDLPELHAPAPPPVQPLHLANASRYAGAQRGAAXXXXXXXXXXPVVRRKRVSLEATCIKRARPPHTHTHTSLQNNTATHCSAAAPRVPPQAVQLREPNLARALPPPARALDVLQACTKEAAGAGAGGSAATAKSFPQEFVTQMHRHFQVIGELLRHFYAGIGGXXXXXXSDIVQKQLHRLVTKMGSKYDELKALRQGLPRDAQGSQLSTLIKPLLDSLDDAF 619          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1630.4305.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JXC6_9PHAE1.940e-12073.61BSD domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LFT0_ECTSI4.520e-11471.67TFIIH subunit (Partial) (Fragment) n=1 Tax=Ectocar... [more]
A0A835YZ40_9STRA1.480e-3438.13BSD domain-containing protein n=1 Tax=Tribonema mi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 341..364
IPR027079TFIIH subunit Tfb1/GTF2H1PANTHERPTHR12856TRANSCRIPTION INITIATION FACTOR IIH-RELATEDcoord: 1..399

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1630contigL-elsbetiae_contig1630:267..9108 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1630.4305.1mRNA_L-elsbetiae_contig1630.4305.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1630 237..9108 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1630.4305.1 ID=prot_L-elsbetiae_contig1630.4305.1|Name=mRNA_L-elsbetiae_contig1630.4305.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=401bp
MSEKEFWTKYIQSAYFNRDRGGGDGGGGGSSSSSSAISGNKRKSLEAGGG
AGGQDDMFLRFAAQEAEREKKEKEEGGGLAASGGGGGGGKRARRAVSSSA
AAGGAGAGGGGRLGAGSVDPMVDLTSQFGDHHSREVDDSDPAEELTEEAN
KRKEVVGKFNRHARLVMQPPDGGGAGAGRRPGLVDSAQSATDMPELRLHK
ETAQEKLEIAHKGRYHGGGGGGGGSGSGGTANGSSSLARPQSPRIIGTVT
LGEAKAQLGPGFSILRERPCVAGAVAAPGQALSALRECTRETDRGIGDAF
HLRGYPEDFIGGMHRHFQIVGELLRHFYASLDRPRSDAGAVAKLARLEAR
MNAKYKELTEERKALPRNADGNRLSAVIKPLLDCLDHAFGRLEERRARRA
G
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027079Tfb1/GTF2H1